GgaINT0126464 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7649740-7650486:+
Coord C1 exon
chr17:7649740-7649863
Coord A exon
chr17:7649864-7650405
Coord C2 exon
chr17:7650406-7650486
Length
542 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TAATCTGTAGTTTCCCATAGGCT
3' ss Score
4.31
Exon sequences
Seq C1 exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
Seq A exon
GTAAGGCTCCAAGGGTCCCTTTGCTTTATTTGTGTTTTTTAGCTGCGTTTGTTTCTTGAGTAAACCGCTTCAAGCTCCCACTGAGTGTCCTCCATCACCTTTTCCCCTGTGTCCTCTATGCTGATGCACTTGCAGATCTGGGCAGGGAAACCCTTCTGCAAAAACAGCCCCTTTCCGTGACCCTTCTCAGGAATCTGAGCTCTCTGAGTGGAGCAGCCTGGTTATGCAAGAGGTTTGTTTGCTTACCCACGATCTGGTAAAGCTAGAAATAAATGCGCTGTAATAACAGGAAGCGAGGATGTTTTGAAAGACAGGGATTTCCAAAACTGGTGTAAAGCAACAGAACCTACTGGTCCCAAATACAGCGACCTAATTCAGGCATGGTTAGTGCTCTCTGGGGGTCAGTTGGAGGCAGAGTGAGCTGCAGTGCTGCAAGCAGGATTTGTCCCATTAGCTCACGAATCTCAGTGCTGTCTGCTGAGCCCTGTGTTCAGATAACTCGTTACCAAGTTCTCCTTTCATTAATCTGTAGTTTCCCATAG
Seq C2 exon
GCTATTCCCTGGTAACGCACATTCCTGCTGGAGCAAGGGATATCCAGATAGTGGAACGGAAAAAATCTGCAGATGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]