BtaINT0017842 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60755576-60758644:+
Coord C1 exon
chr13:60755576-60755697
Coord A exon
chr13:60755698-60758411
Coord C2 exon
chr13:60758412-60758644
Length
2714 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCTCCCTCCCCTCCCTGCAGCGC
3' ss Score
11.7
Exon sequences
Seq C1 exon
GTTCTGAACCAGACGTCACGAATGGAGATCCAGCTGCTGGAGACCTCACTGTCCACCAACAAGCTGGAGAAACAGCTGCTGCTGCAGGGCCATGAGCTCCACCGGCTGCAGGGCCACAACAG
Seq A exon
GTGGGCACTGGCACCCTGACACGGGACACCCTGGCAGGGACCAGGGCTGAGCTCCAGGGCTGGGCTGGGACCCAAGTGGGCTGGGGATCTGGGGTGAGCCCCAGAACCAGCCTGAGCTGGGCTCTGTCAGGGGGCAAAATGAAAAGGTGGACTTGAGCTAGTGCCCAGGATGGGGGCTAGGGCCAGAGGTAGAGGCCTGAAGACTGGAGTGAGGGGGCACTAGGGCTGGGGCTAGAGCTGGCACGTGGCCAGGGCTAGGGCAAGGCCTGAAACCAGGGTAGGAGATCAGACTAAAGCTGAGAGTGAAGGTGGACACTGGGGCTTGGCTGAGGCTGAGGCTAGGGGCTAGGCAGGCATGGGGCCTGACCACCCTGTCCTGAGTGGAGACAGGAGACAGGCATTTTCCTGGGACGTGGGAAACCCTGATTTTTCCTCTCTTCTTTCTCTCTCTCTCTCTTTCTTTCCTTCTTTTCTATCTTCCTTTATTTATTTTATAGATTTTAACAGCTTTTCTGAATCACCATTTGGATAACATACAATTCACCCTGTACATCTTAATTTGATCTACATATCTGTAAATAAATAAATATAATCTCACCTACCAACTCCTCTCCTTCCCAGAAACAACCACAGTGATATGTTTCTTGTCTGTATTAGCAGAGAGTCTCAGCATTTATAAGCAAATAAACACAAAGGGAACACCCTTTAAATTACAAAGAAAGAGTCCTGGGGTACAGATAAGGCAGAGACATGGACCTCTGAAGCTGATTTCATCTCAGTTTCGAGCTGAGTGGAGAAAAAACTGCCAAGCTCAGGCTGGTGGAGAAAGCAAACCCACACAGGTAAGCAGTCACAGGCCTGTGTACAGAATGAGATGTTATTGTTGCTCATATGCTGAGTCAAGATAAGGATACAAGCATCCTCAAGCTCCCTGTGATCTGGGGGCCATTAATGATAGTTTGTATACCTCCTTATTCTTACTCCCCATCCCAAGGGAAGGGGGAAGCACTGGGATACTACCAATGACTCTGAACTGAATTAAAGTGCCTAGAAACCAGTGAGCCACCAGTGGGCTTCCCTGGTGGCTCAAATGGTAAAGAGTTTGCCCACAATGTGGGAGACCCGGGTTCAATCCCTGGGTTGGGAAAATCCCCTGGAGAAGGAAATGTCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACGGAGAAGCCCGACAGGTTACAGTCCATGGGGTCGCAAAGAGTTGGACACAACTGAGCGACCACCACACACAGAAACCAGTGAAGATGGAGGGTGTCATCAATACACGCTTGGCCCATGGAGACAGCTAAAATTCTAGAGTCCAGGTGGAATTGTCTCTTCCTGAGGCATAATCTGGGGTCCAGAGAAATTCCTCCGGCCCTGGTTGGACTCATTTTCTTAGACTGGAGAATGATAAGAAAATATCTCCTTCCTGCTTCATCTCTCAGCTACCCACCCACTGGCAGCAGAGGCAAATATGTATGCATAGTCCCCTTTTTAACCCTTTTTAAACCCAAGTGGAACATACTATTCTTTGGAAGATGATATTTTCTTTTTTTTTTCAATTATCCTGGAGATGGTTCCATAGCTACGTGACACACTTGTGAATTCTTTTCTCCAGCTGCATAATGTTCCACTGGACGCCTGTCCCCAGATATATTTCCCAGTGCCCAGTTAATGGGTACTGAGGTTGTTCCAGTCTCTTATGATTCCAACACGTGGTGCTATGAATATTGTTCCCATACCTTATTGAACACACATGTGAACAAATCTGTAGGACAAAATGCCAGAAGTGCAAAAGCTGAGTCAAAAATTTCTTTCTTTTTAAAAAAAACTCATTACAAAAATGCCTCATGCTTATTATATCCTCAGACAATAGACACTTGTACAAAATGAAAGGTAAAGTTGGCCCCCTCCACCCACCCCTTCCTTTTCATTTCCATCTGCTCAAACCTGATCCACAGAAGTACCAGCACTTAGTGGATTTTCTTTCACATTCTCTACAAACTCAGGTACCACAATGTCCTTCCATATGTCTATCCACGCCTCTTCCTATAAGCTCCCGAGTATCCCTCAACAATTTACATTAATACCATTTTCTTTCTCTTTTAATTTCTCACATGTGGGGTTAGACTGGAGGCAGTGATGTGCCACTCCAAGTCCCTGGCCTCTTTCCCTTCTGCACAACTGAGCTCAGCCTCCTTGCTCTTCAGAACTGCTCCAGATCATTTCCAGGGAAACCAGAACAGAAGAGCTTCAGCCACTCCTGGCTGTTGTGCATTTTGGCTGTTTTGTTTTTCCCCATTACAACCAACTCTCCCAAAGGACATTCTTGCCCATGCCCCCTGGAACTTGTCTCTGGTGAGTGGACTGCTATTTCAAAGGACACGCGTATTTGGGATTTGATCACGGCTAGCTGGTTGCTGGTGTGTCCCTCCCACCCCACCTGTTTCCTCTGCTGGACCCCAAGGCATTTTACTCCAGGGCCAAGTCTCTCTTTCCTCCATTCCTCACTCTGCTATCCGTGGGCACGGACCTCCCGGCTGTGGAACCCTAGGCAGGACGCTACCTCTCCGAGCCCCGGTGCGGTCTGAGCCTCACCCGAGGACCCAGGGGAAAGCCTTGAGTGTGACTGCACGGTGGGGGCGGCGGGTTCACTCCTGTGCGCTCCCTCCCCTCCCTGCAG
Seq C2 exon
CGCGCTGGAGACGCGGGTGCAAGCCCTGGAGACACAGCAGCAGGCGGAGCTGGCCAGCCTCCGCGGCGAGAAGGAGCGACTGCGGCGCCTGCTGGGCCGCCAGAGCGGCGCCCTCGCCGGCCTCGAGCGCACCCTGCGCGCCGCCAGCAGCAACTCCAGCCTCCTGCAGCGCCAGCAGCACCAGCTGCTCGAGTCGGTGCAGCGCCTGGTGCGCGTCATGGCCCAGGGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811:ENSBTAT00000029073:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development