GgaINT1006106 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10241611-10242191:+
Coord C1 exon
chr20:10241611-10241732
Coord A exon
chr20:10241733-10241958
Coord C2 exon
chr20:10241959-10242191
Length
226 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
3' ss Seq
CACCGCGCATTCCCTTGCAGCAT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTGCTGAACCAGACGTCACGCATCGAGATGCAGCTGCTGGAGAACTCCCTGTCCACCACCAAGCTGGAGAAGCAGCTGCTGGTGCAGACAAACGAGATCCACCAGCTGCAGAGCAGGAACAA
Seq A exon
GTAGGGGCTGGGGCTGCTCTGCAGGAGAGCTGGAGCCCCTCCGGGGCTCATCAGGGGTCCCTGTGGGTGACAAGGTCTCATTACAGCCCTTTGGGTGGGGAAGCGTGCCGTCAAGTCACCCACGTCCCGCTGGTGCCACTTGTAGGGGACAGGGGCAGCTCACAGCGATGCTGGGGAACTGCAGCCAGGCCGGAGCTGCCCATCCCCACCGCGCATTCCCTTGCAG
Seq C2 exon
CATCCTGGAGGTGCGGGTGCTGGATATGGAGGCGAAGCACCAGGCGGAGCTGGCGGGGATCCGCTCAGAGAAGGAGAGGCTGCAGCACCTGGTGAGCCGGCAGAGCGGCACCATCCAGGAGCTGGAGAAGTCTCTGCTGGCGGCCAATGCAAACGCCAGCCTGCTGCAGCGACAGCAGCTGCAGCTCCTGGAGTCGGTGCAGAGCCTGGTGCGCCTCGTGGCAGAGGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF032458=Phage_lysis=PU(36.1=73.2)
A:
NA
C2:
PF032458=Phage_lysis=PD(62.7=65.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAGCTGCTGGAGAACTC
R:
CTCTGCACCGACTCCAGGAG
Band lengths:
300-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]