HsaINT0007985 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:865721-869082:-
Coord C1 exon
chr20:868961-869082
Coord A exon
chr20:865969-868960
Coord C2 exon
chr20:865721-865968
Length
2992 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTGCGCCCCCTACCCCGCAGCGC
3' ss Score
9.04
Exon sequences
Seq C1 exon
CTCCTGAACCAGACATCAAGAATGGATGCCCAGATGCCAGAGACCTTTCTGTCCACCAACAAGCTGGAGAACCAGCTGCTGCTACAGAGGCAGAAGCTCCAGCAGCTTCAGGGCCAAAACAG
Seq A exon
GTGGGTGTGGCACCTGGCACCAGACTAGGACAGGGGCTGGGGCTGGAGTCAAGTTTAGGACCTAGGGCAGGCACCAGAGCCAGGGCTAGGACTGGGGCTGGAGCCAGGACCGGAAGCTGGACGTGGGCTGGTGTCTGGGATAGGGCCTGCAGCCAGACCTAGGAGCTTGGATTAGGATTGGGGCAAGGAGGTATCCTGGGAGTTAGGGCTGAAACTAGAGCTGGGAATAGCCCCTGCTGGGGAAGGACTGAAACCAGGGTTGGAGTCTAGACTGAGGCTGGAAATGAGAGTGGATACGGGGCTGGGCTAGGAGCCAGGCAAACACATTGCCTGGCCCCTGCACTGGGTGGGACAGGGGATAGGCATCTTCCTGGGGCCCAGGACACCCTGATTCTTTCTTTCCCTTTCCTTCCTTCCTTCCTTCCTTCCTCCTTCTTTTATTTATCTCGTAAATTTTAACAGCTTTATTGAGATCTAATTCACCCACCATACTATTCATCCGGTAAACTTTATTGGCTTTACTTCTTTGCAAATAAATAAATCTGGTGCTATCTACGATTCCTTTCCCAGAAACAACCACAGTTACCAGGTTCTTGTCCACACTATCAGAGAGTCTTTGCATTTATAAGCAAATGGGCATCAGGGGAACACCCTTTAAATTACAAAAAAAAAAAAAAAAAAGCGGTCATGAGGTTTAGATAAAGCAGAAAAATCTGGCAGCTAAGGCTGATTTCACCTCAGTTTCAAGCTGAGTGAAGAAAAAAAGCTGCCAAAGTCAGGGTTCTGGAGAAGGCAAAATCTACCCACTGAACAAGCCACAGGCCTGTGAATCAGGCAAGATGTTGTTGTTCACATGCCGGTTCAGGATAAGGCCATAAGATCCCCCAGCTCTCTCTAATCTGGGTGCAATTAATGACAATCTGCCCATCTTCTTATTCTCCCAACCCAAGGTCTCAGTGGCAAGGACTGGGACACTTTCAATGACTCTAAATTAACACTAGGTGTCTAGAAATCAGTGAGGATGGAGGATGTCATCGGTAAACTCTTGGCCCATGAAGACAGGGCAGGAATTCTAGAATTTCAGTGTGCCCCAATTCTCTCTTTTCCTGCAGCATAATTGGGAGTCCAGAGGAAATTTCTTCTGCCCTAGCTGGACTCAATTTCTTAGTCTGCAGAATGAGTTGGCACAAGTGGATATACAGTAAAATGTCTCCCTCCCAGCCCTGTCTCTCAGCCACCCACCCAAGCCAGAGGTAGCCACTGTTCCTAGTTTCTTGTGTATCCTTCCATTCATTCAACCAACAATTATTTTTCAAACTCTTTTCATGTGTCAGGCACTATTGTAGACACTGTGGATACAGAAGTGAACAAAGAGACAAAAGCCCCTGTCCTCGTGAAGCTGACATCCTATAAGCTGACATTCCAGGGTTTCTTATGAATATGCAAACACATACATACAGAAGATTGCTAACTTACAATGGTTGGGCTTACAATTTTGTGACTTAACAGTGGTATGAAAGTGATACACATGCAGTAGAAACCGTACTTTGAGTACCCATACAACCATTCGGTTTTTCTCTTTCAGTACAATATCAATACCTTACATAAGCTACTCAACATTTTGTTATAAAATAGGTTTTGTGCTAGATGATCGTGCCCAATCACAGGCTAATGTAAGTGTTCTAAGCATGTTTAAGATGGTCTAGGCTAAGCTAGGATGTTCAGCAGGTTAGGTGTATTAAATGAGTTTTTGACTTAGGACATTTTCAACTTACGATGGCTTTATTAGGACATAGCCCCATCATACATTTTGGAGCATCTGTACATTCCCATTTTTATCCTTTTTAAGCCCAAATGTAGCCTACTACTTGTTTATACCTTGTTTCTACAAATTATTATTCAGTTACCTTGGAAAGATTCTATAACTGCATGACATGCTTGCTCATTTTTTTCTCCACCTTTATAATGCTCCACCATATGTGGTCCCTGCTTTTATTCCTCCAGTCCCCAGTTAATGGATATTGAGGTTGCTTCCAGCCTTTTACTAATCCAACCAGTGATACGATGAGTAACATTTCCATATCTCATTTCACACACATGTGAGTAAATCTGGAGGATAAAATGTCCAAAAAGAAAGAGCTGAGTCTAAGGCTTTCTTTTGAAAAACTCCTCTTTGCTTCTAAATCCATTACAAAAAATGTCTCTTGATTATTATAATATCATCGGACAACAGGAACCTGTACAAAATAAAAGTGAAAGTTGGGCCCTCCATCCTGCCCCCATCTTCCTCCTCTCCATCTTCATCCACTCAAACCTGCTCTGCAGAAGTCACAGCACTTGAGGGAATTTCTTTCATATTCTTCCCAAACACAGGCACCACTGCGGTCTTTCCAGCCTTCTCCTATATGTTCACCCCATTTCTCTTTATTTACATTAATACTTTCTTTCTTCTCTTGCCACACATGGGGTTAGGCTTGATGTGCCCCAAGTCCTGGGCATCTTTCCAATTCTGTGCAAATGCCTCCTCCTTCATGACTGCGGAACATTTCCAGGGACGCCAAAACGCAACGGATTCAGCCAGTCCTGGCTTTTGGGCATCTAGGCTATATCTTTTTTGGTTGGTTGGTTAGTTTGTTTTTCTATTACAAGCAAGTCCCCAGGGCCATTCTTGACCATGCTCCCTAGAGGATAACTCCTGAGAGTAGACTGCTGGGTCAAAAAGCAAGCACAGTTGGGATTTGATAATAGCTACCCAGTTGCTGGTGTCCCTCCCACACCACCTCTTTCTTCCACTAAACCTCAATCTATATTACTCCAGGGCCGGGTATCTCTTTTCTCCCCTCCTCAATCTGTGCCTACAGTGGGCACAGGACGTTCCACCACACTTGAGTCTCATCGTCGGGCTGCAGGGACTCCAGGGCCGGGGAGGCGCGCGGGGGTGCGTGCTTCGCGAGGATGCCAGGCTCACCTCTGTGCGCCCCCTACCCCGCAG
Seq C2 exon
CGCGCTCGAGAAGCGGTTGCAGGCCCTGGAGACCAAGCAGCAGGAGGAGCTGGCCAGCATCCTCAGCAAGAAGGCGAAGCTGCTGAACACGCTGAGCCGCCAGAGCGCCGCCCTCACCAACATCGAGCGCGGCCTGCGCGGTGTCAGGCACAACTCCAGCCTCCTGCAGGACCAGCAGCACAGCCTGCGCCAGCTGCTGGTGTTGTTGCGGCACCTGGTGCAAGAAAGGGCTAACGCCTCGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)