BtaINT0018314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17950880-17951361:-
Coord C1 exon
chr13:17951236-17951361
Coord A exon
chr13:17950942-17951235
Coord C2 exon
chr13:17950880-17950941
Length
294 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TCTGTGATTCCATTTTATAGATA
3' ss Score
8.04
Exon sequences
Seq C1 exon
GAGCCACAAAGCCAGAGATTGTAGACAAAGAAAGTGATACAGATATTATTGAAAGGGCACCACAAGAGCAAATAAATCATGACCATTTGAGTTCTGTTGATGCAACACACAAAAATAATAGAAGTG
Seq A exon
GTAAGTTAGTGAATGTCTGTGGATTTTTTTCTATGCTTAAAAGCGCAAATAAAAACCTTTAAAGTGCATAGATGCAAATATGGCATCCATTTCTTTTTAAGTGTGTTTCTTTTGCTCTCTTTCTTCAGTCCCAAGTACTACCAGCTTTTTCTTCCTGAAAATGCTTCAACCCTCTGAAATTCTTTTCCACTAGTTCATTTTATTGAACTATTTGTGGGTAGAGAGAGACATATATGTATTAAAATTCATACTAGTAAATGTTCTCATTAATGTATCTGTGATTCCATTTTATAG
Seq C2 exon
ATATGATGTCAGCCTTAGGTTTGGGAGAAGAGGAAGATATAGAATCACCTTGGGATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACAAAGCCAGAGATTGT
R:
CTCAGAATCCCAAGGTGATTCT
Band lengths:
188-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development