Special

MmuINT0015536 @ mm9

Intron Retention

Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118498332-118498977:-
Coord C1 exon
chr6:118498848-118498977
Coord A exon
chr6:118498394-118498847
Coord C2 exon
chr6:118498332-118498393
Length
454 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TATGCAACTGTGTTTTATAGAAA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GAAGGAGCAACCGAGCTAGCAATTGAAGGAGAAGAAAACGGTACTGATGTTATTGAGAGCGCTTCACAGGAGCAACCAAATCATGACAATTTAACCCGTGCTGATGGTTGGCACAAAAGTAATAAAAGTG
Seq A exon
GTGAGTTAGTGACTACTTCCAAACATTTCCATGCTTACTGTTAAAAAGCACTGAAGGGTTGAGCACCAAAGCCAGCATCTGTTTCTTCTAACTACTCTTCCTTTTGCTCTTCTTTTTTTTTAATTTATTTATTTTATTTATATGAGCACACTGTAGCTGTCTTCAGCCACACCAGAAGAGAACATTGGATCCCATTATAGATGGTTGCGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGATAGAACAGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTCTCTTGCTCTTCCTTGCTATACCAATTCCGTGTGAAGCTGCTTAACCACCAAAAGCTGTCATCTTTATTCTAACTTTGTGGATATAGATAAACACACATGAGTTTAAAATTCAGGACTACGTGTTTTAATGAATATGTATGCAACTGTGTTTTATAG
Seq C2 exon
AAATGATGTCTGCATTAGGATTAGGAGAAGACGAAGATGAACACTCGCCTTGGGATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108449





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000007971, ENSMUSP00000086136, ENSMUSP00000108449f296A, ENSMUSP00000108449f297A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27066549-27067156 
LOW PSI
HsaINT0008639
(ANKRD26)
Human
(hg19)
chr10:27355478-27356085 
LOW PSI
HsaINT0008639
(ANKRD26)
Rat
(rn6)
chr4:150596842-150597080 
ALTERNATIVE
RnoINT0017741
(Ankrd26)
Cow
(bosTau6)
chr13:17950942-17951235 
LOW PSI
BtaINT0018314
(ANKRD26)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGAGCAACCGAGCTAGCAAT

				
R: 
CTCAGAATCCCAAGGCGAGTG

				
Band lengths: 
190-644

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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