HsaINT0008639 @ hg38
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27066487-27067286:-
Coord C1 exon
chr10:27067157-27067286
Coord A exon
chr10:27066549-27067156
Coord C2 exon
chr10:27066487-27066548
Length
608 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTGTGTATCACATTTGATAGATA
3' ss Score
4.12
Exon sequences
Seq C1 exon
GAAGAACCAACAAAGCCAGGCATTGCAAAAAAAGAAAATGGTATTGATATTATTGAAAGTGCTCCACTAGAGCAAACAAATAATGACAATTTGACTTATGTTGATGAAGTGCACAAAAATAATAGAAGTG
Seq A exon
GTAAGTTAGTGGATATCTCTGAATATTTTTCTATCCTTAAGTTCTATTCTGGGGTCCAGATGTGGCTCACACCTGTGATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTAGCCAACATGATGAAACCCCATCTCTACTAAAAATACAAACATTAGCTGGGTGTGGTGGTGCGTGCCTATAATCCCAGGTACTCGGGAGGCTGAGGCAGAGAATTGCTTGAACCTGGGAGACAGAAGTTGCAGTGGGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCATCAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAATCTATTCTAAGACAACCAATTAACATATGCAGACCCAAATATTATATTCATTTTAAAAATATTTTTCTTTTGCTGTCTTTCTTCATATTACCAATTTTTTCCTGAGACTGCATCAACCTTGTGAAATTCTTTTTTTGCTATTATTTTTATTTTATTGAAATATTCATGAATGGAGATAGACTTGTATATGTATTTAATTATGTATTTAAAATTTACAATAGTAAATGTTCTCATGAATATATCTGTGTATCACATTTGATAG
Seq C2 exon
ATATGATGTCCGCATTAGGATTAGGACAAGAGGAAGATATAGAATCACCTTGGGATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890:ENST00000376087:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCAACAAAGCCAGGCA
R:
CTCAGAATCCCAAGGTGATTCT
Band lengths:
191-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development