BtaINT0018441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28131467-28131915:-
Coord C1 exon
chr5:28131786-28131915
Coord A exon
chr5:28131608-28131785
Coord C2 exon
chr5:28131467-28131607
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAGCCCTTGGTGCCTTGTAGGCC
3' ss Score
6
Exon sequences
Seq C1 exon
ACAGGTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq A exon
GTGAGAGGCTGCTAACCCCATCCTTAATCAGTACCCCTGCTCCAGACCCGACCATAGCCCCACACTGTCTGCAATGACGTACTCCCACCACAGACTCTGCCTTGTTGGGTGGAGGGTGGGTTTGGGGCTTTGTCATCTCTTTCTTGAGTAGCTAAGCTCAGCCCTTGGTGCCTTGTAG
Seq C2 exon
GCCACGTGTCTCTGGTGAGTCACCTGATCAACTACTATGCAGGCCTTGACCTGGAGCGCCGGGACCAGCGGGGACTGACCGCGCTGATGAAGGCCGCCATGCGGGATCGCTCGGAATGTGTTGCTGCCCTCCTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113:ENSBTAT00000022764:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTACCATGGTTTCCAA
R:
GAGGAGGGCAGCAACACATTC
Band lengths:
249-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]