RnoINT0017829 @ rn6
Intron Retention
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142757014-142757437:+
Coord C1 exon
chr7:142757014-142757143
Coord A exon
chr7:142757144-142757296
Coord C2 exon
chr7:142757297-142757437
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TTGTGGTCCTGTCTCTGCAGGTC
3' ss Score
11.45
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
Seq A exon
GTGTGAGACCCCACCCTGCAGCAACCCCACCTTCATCCCCAACTCCACCCCACCCCCACTGCCCCAGCCCCAAATCTTGCACAGGAGTCTCCCCCGCTAGGCTTCAGCATTCCCTTACCTTGGGAAACTAGCTTTGTGGTCCTGTCTCTGCAG
Seq C2 exon
GTCATGTGCCTCTGGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTGACAGCTCTGATGAAGGCTGCCATTCGGGACCGCTCTGAGTGTGTGGTTGCACTCCTTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733:ENSRNOT00000071298:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(60.6=100)
A:
NA
C2:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(44.7=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGGTTCCATTGTGGCT
R:
GCCATAAGGAGTGCAACCACA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]