DreINT0030200 @ danRer10
Intron Retention
Gene
ENSDARG00000058357 | ankrd33ba
Description
ankyrin repeat domain 33ba [Source:ZFIN;Acc:ZDB-GENE-040724-39]
Coordinates
chr24:21911212-21911646:+
Coord C1 exon
chr24:21911212-21911341
Coord A exon
chr24:21911342-21911505
Coord C2 exon
chr24:21911506-21911646
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTCGCCAAAACAATTTCAGGTC
3' ss Score
6.44
Exon sequences
Seq C1 exon
ACTGGACTAATAGTGGCGTGCTACCAAGGCTATGTGGATGTAGTGATGGCTCTCTCCCAGTGTCCTCATCTGGATGTGAACTGGTCAGACAACGAGGGCAACACAGCCCTCATCACTGCTTCCCAGGCAG
Seq A exon
GTAAGAACACTCAATCATCTTTAATTCAATCCAAACCTGCACATATTTACATTTAGATTACTTAAAGTATCAGTTTCAGCGTAAAAAAAATACTGGAGCTGAATTGCGAAGTGCCCTAGAAAAGTTGATGAACAAATTTCCATTATTCGCCAAAACAATTTCAG
Seq C2 exon
GTCACATCACAATCTGTAACTACCTACTCAACTATTTTCCTGGGCTTGACATCGAGAAGAGGAACTGCCATGGTTTCAGCGCTCTGATGAAAGCTGCTATGCAGGGTCGAGTGGAGTGTGTCAAAGCACTGATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058357:ENSDART00000132390:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(42.7=93.2)
A:
NA
C2:
PF127962=Ank_2=FE(49.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTACCAAGGCTATGTGG
R:
TGCTTTGACACACTCCACTCG
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]