GgaINT0095291 @ galGal3
Intron Retention
Gene
ENSGALG00000013003 | ANKRD33B
Description
NA
Coordinates
chr2:80242585-80247583:-
Coord C1 exon
chr2:80247451-80247583
Coord A exon
chr2:80242726-80247450
Coord C2 exon
chr2:80242585-80242725
Length
4725 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTTTTCTTTTTTTTTAAGGGC
3' ss Score
11.18
Exon sequences
Seq C1 exon
CAGAATGGTCTCATCGTCGCCTGTTACCAAGGGTATGTGGATATTGTCATAGCCTTATCACAGTGCCCTCACCTCGATGTGAACTGGCAGGACAATGAAGGGAACACGGCCCTGATCACAGCTGCGCAGGCAG
Seq A exon
GTAAGGGTCTTCTCTGCCCCTTGTATGGGGGTCTTAGGAGGGATCCATGCTGTGACTGCTATTTTTAGGACTTTTTTCAAAGCCTTACAAGAAATTCGTCTGCATAAGATTATCCTGGCCAAGCCTGCTCCCAAATAAGTTTGTCATTATTTGAACTAATTAATCTAAAGCAATATTTATCCTATAGACTAACAGTGAATAAGCTATACATTTCCGCCAGATGCCATTAAATATTTTAGCTTAAAGTGTGCCCAGAATGTGCAGTCCTGTATGACCTGGTTCCTTTAAACTCATTTCCTATGTTTGCTCCAATGGGTAAATAGTAAACAGCAGTTACTACTGCTGTACCATAATGTGCTGTATTGCTGCTCATAGCTCTCTCTCTGTCTCATGCTCATTGCACCTTCCTCAGTGGGTTTGTAATGACTACTGACTGTAGGAAAATGTATCATCATTCAGAAATTTCAGTGTGCATCTAAAAAATGTTTCTAGTGAGTAGCCAAACCGTGTTGCACCTGAAAGTGAACTCTGCTAGAGAGCCCTGAAAGAAGGAATTGCAACCACAGTTATGTTCATAGCAAAGTTGTGAGCGTGGCAGCTTTTTAAAGTGGAGAAGTCTCCAAAGCTCTCATCTTCTTTTATTTATCTGCCCTAACACAAATTTGGACAGTAGAAGGTTTAACATTAACACCAACTCCTTCCTGATTGTTATAACTCACGCTAATGAGCTCAGAATTAATCTGGAGGGCTGACATTGACTTGACTCTGTCTGCCAGCACTTGTTATTGATCCCCAGTGCCTCTGGAAATGACTGCAGTCAGCAGAAACGTACCCAAACCCCTAACAACGGGGAAGTTCTCCCCTGCCTACGATAATCCTGAGCTCTGACACTGACACCAGTTGTTCAATTCATCATCACGAGACACTGCTGTAGCATTAATACAGATTACCATGTGGTTAGCACTGCAACCAGAGCAGCTATGGTGTGATAGATGCTGCTTAATTACTGCTGAACTTTAAGTAGCAACACTAAGCAGTGTGTTAGAAAGAGCTGAAAGAAAAGCCTGTGCTATCTCACCTTTAGTGGCGGGTTGATTCAGTTTTCCTGAATTTTATTTCTGGAAAACAAATTATTCAAGCAGCTCTCCGCCATTTATGAAAAAAAAAAAAACCAAAAAAACCCACAAAGGAACAACCAAACAGTATTTCCTACAGAAAGTCTAGTAGCAAACCCGCATTATTTCAGCTAACTGGTGGTATCCAGGTGGTTTCAGAGAGCGCTTCCATTCTTGTTATGGTCCCATAAACATCCATATGTGCAGAAGAAGTGTCCTGGCTGCCTAGACATGTTGTTTCAGTGCAGTCAGCATCTAAAATTAAATAGAATTATTTTACAGAGCAGCCAGGGTCTCAGAAGAGCATTGAATTCGGTTCCTTTTACCCCTCTGATTTGGTTGATTTTACGTTCACATCTTTCAAAGAACCCATCCTAAATGGAAGCCTCTCTGCACGGGCTGACCGTAAGAAAATAGTCTGAGGAGATCAGTGGAAAGCAGTGGGTTCTGAATAAATTAATATAGAAAAAACAATCACTGACAAAGCATTTAATGCCGTATGTAAGTTTCAGGTTTGAAAATGGGTCTGTTTTCCTGCTCTCTCAGCATTTCTTACAGACATAGCATCCTTCTCAAGAGGCCTTTCCCTTCCAAAACTGAAAATTGGTAGCGGCCAGCAGAGGGTGAAGCCCAGAAACAGGCGGTGGTGCTGCTAAAGGAGAAATAAAGTCATTAATTGGCAGAACAGGGGAAATGCGGGGGGAAAAAAAGGAAGATTGATGAAAACGAGCATGAAATAACAAGCAGCAAAAAGAAAGGGAGGAAGGAAAATGGTTACAAAGAAGGAAAGAGGGTGAAAGGGTACGTTAAATAAAAATCTGCTGGTTCTCAGTTCTGCTGTTGATGAGGACATAGTTACATCAGTGGCAATGTACGGCAATTGGCATGTGCTGGGCTTTAGAGCTGTAAATGTTCCCTTTTGAAGTATGGATATTATATATTACAGGGTCCAGTCTGGGGCAGGCTCTTGAAACACAAATCACGAAGCAGGTGATTTCTTTGCATAAATGGAGACATGAGAATGCAACTACCTCAGACATCCAGATCATGACGACTGTGCATCTTCAGTTTTACTTGTCTGCCAGAAAGCATTCAATGCCTGTAGATCAAATGCAGGCTATCTGGAAACATGAGTCACGTCCAAGCGGTGACACTGTATGATAGATCATCCTCCTTACTACACGGAGTATCCTTCTGCCTGCATTAAATAGATGATTACGTATCATTGTAACCATTATATACATTCTCTCTGTGGCAGCAATAAAGTGAGCTAAGCTGTTACAGACATCTGTGCTGTTCACTAAATGTGTCTCATAGGGCGATGAACTGTGCCCTCAGCACGCCAATCCTCCAGCAGGTAGAGCTGGCTTACAGGCAGCAGAGCAGGAGCCTGACTCGGATCCTGTGTTGCTGCCCTGCCTGATGCTAGGCTCATTTATTGCAGAGCTTCATGCGGCTTCCATAGCAGGCTTTAAATCATGAAAGACTCACTTACCTGATTTATGACTTAGATATGCACTACTAGTTCCTACAGATGCGGGAGAACTGAAGCAAACATTGTGGCCTTAAATCAAAAGCATGTGACACGGTCTGAACACAAACTTGGCAGATCTGAGTTTTGCTTTGAATTTGATGTCTGTTTGAACTTGAAATTTGAAACAAACCTCAGGGGGCAGCACCTCCTGCAAGCTGGAACTGAAGTGATTTTCAGGAATCCCTGTGAAATGAAGGTGATGGATTTTTTGGTGCCAAACAGCTGTAGCACCCCAGAGAGTTTTGCCTGAGCAAAGTCCCTTGGGTTGTCTCTTAGGCTTCCCTCCGATTCACAGAAAAACATCCCTTGCTGCAGCTATGGGCCTGGCAAAGGGAAGAACACCTTTAGTAATGTATAAGTGCTGAAAATTTGTCCATTTTATTATTTCTCCTTGTTTTGGTTCCTGTCTCCGATTTTTCTGTCAAAAAGCATTATTTCAGCCGTTGCAAACCAATCATGAGGCACACTGTACATTGATGAAACAGAGCATGTCCTGCAAAACAGCTTGGGCATGAAGCTTCTGCTGGTAGTAACTGATACCCTGTCAAGGATTTGGTCTCACGCCATGAAGTCAGTGAAGCCGAAGCCTCCATGCTGAGTAAGCAGGACTGGGTCACTCAATCCTGCCTTGAACACAGTTCGCTCTTGCTGTGTTCAGCTTACTGCAGCTTGCCATATCTTTACGTTTCATTGCCACCAGCCCATCCAAGGTACCACGAGCATCTTCCCTGGTTTTCCCTGACTACGGCACTGTTGAGCAGATCTGTGCTATCTCTCCACCTGCTCCGGTTTCAGCAGTGTATCCTGGCAAGGTAGCAGAGCCCAGCAGATTCTAGGAGACAAAGAGTAACACCTGGAAAGCATCTTAAATTCCACGCTAAAGCTTTTCTTAACTTGCTTTCCAAAGTGAGTCCAGGACTGTGTTGGTGCAAGGCAACATCTGATGAAATCTGCACCAGATGCGACACCATAAGCTTTAAAAAGTGCCCTGTATGAATTATAATCTGCTTCGGTAACATTTCTAGATGAATTTGAGTGATATGCATCACAGAATATTCAGCTGGACTGCGGAGAGAAATGAGAATATTTTTACAGCTCCTGGTAATTAAACTGTGATTGTCGCAGCTGCCTGGCAGGCTGCATTATTTCACAGAGCATCAAAGCATCATAAAACGAATGGCAAAAAAAGGGTAAAGTTTTTTGAATGAGTCATAATGGCACTGGGTATTTGTCTTCTTCTGACGGTCCAATTATAAAGGCTTGATGTTTTAATTAGTCTTCCCACCAGCTAGCCAGAGATAGCTTCAGCTACTCAGCACACCCCTGCTGACACCAGTTGTCCACGCTCATGGGGCACATGAACGGTAACAAGTTGCTTTTAGAGACAGAACTCAGGGCATTTGTTTTGCTACCTAAACTGAAGTGCGGCTTCATTTCCCTGCTGCTGAAAAATGGACAAGTGGCTTTGCACGGTCAGATGGTAAAGTAAAAATGTGGGAGCCAGTGCAAAATATTTCTTTGCCTAGTACCATGGCTGGCATGGTTTGCTCGTAGTATTGGCTGGAACTACCACGTGTAATTACTTCTTAATGGAGCACTGTGACTGTAAGGCTCAAATTTACCAGAGGGGTGAAAGAGCTGAATCTTTGCTAGGAATTCCCCCAGGGGACAGGCAGTACGACCCCCTCGTTGAAGAAACTGAGTCCCCTTCAACCTCAGAGTGACCACCTCTGATATTTAATTATTCCTGTACCTTAGATTCATTTTCAGAGAGGAAAAAACCTCACTGGGGGCAACCTGGGAGGCGGTAGGAGTCCGGCTTTCCAGGACTATCCCACGTTCTGCCACGGGACAGTGCCACCTAATGCTGAAGCTAATGACTGCAATGAGCAGGAAAGTCACTTGAGAACCGATCTCATTCATCGTCCGTATTTTTGCGGTAGTCAAACCTGCAGCACTAATTTTTGGTTTGACCTTGAGACTGGCTCTTAATTCTTTGATGGATTTTCTCTTCTTCTTCTTCTCCTTCTTCTTTTTTTTTTTTCTTTCTTCTTCTTTTTTTTCTTTTTTTTTAAG
Seq C2 exon
GGCACATAACCATTACAAACTATTTGTTGAACTATTTCCCTGGGCTTGACATTGAGAAGAGGAATGTGTTTGGATTTACAGCACTGATGAAATCTGCGATGCAGGGACGAACGGAATGCGTGAAAGCCTTGATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013003:ENSGALT00000021235:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(42.7=91.1)
A:
NA
C2:
PF127962=Ank_2=FE(49.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]