DreINT0030194 @ danRer10
Intron Retention
Gene
ENSDARG00000055638 | ankrd33aa
Description
ankyrin repeat domain 33Aa [Source:ZFIN;Acc:ZDB-GENE-080520-2]
Coordinates
chr23:27941757-27942103:-
Coord C1 exon
chr23:27941974-27942103
Coord A exon
chr23:27941898-27941973
Coord C2 exon
chr23:27941757-27941897
Length
76 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TCTAAGTTTAAATGTTGCAGGTT
3' ss Score
4.59
Exon sequences
Seq C1 exon
AATGGTCTGATGCTGGCAGTCTCAAAAGGCTTTGTGGATATTGTGTATGGACTCAATCAGTGCCCATTTCTGGATATCAATCATCAGGATAATGATGGCAACACTGCACTTATGATCGCCGCACAAGCTG
Seq A exon
GTAGGTTCTTTATGAACACATAAAGCAGAAAACACGAAAGATTCTTAATACTTAATTCTAAGTTTAAATGTTGCAG
Seq C2 exon
GTTTCGTAACCATCCTCACTTACATCATCAATTTCTTCCCTGGACTTGACATGGAGCTCCGGGATAACAGAGGCTTCACGGCTCTCCTCAAGGCAGTCATGCAGGGCAGCAATGACTGTGTGGCGTCACTGCTCATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055638:ENSDART00000143662:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAGTCTCAAAAGGCTT
R:
GAGCTCCATGTCAAGTCCAGG
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]