MmuINT0015652 @ mm9
Intron Retention
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100947008-100947456:+
Coord C1 exon
chr15:100947008-100947137
Coord A exon
chr15:100947138-100947315
Coord C2 exon
chr15:100947316-100947456
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
ATGTGGTCCTGTCTCTGCAGGTC
3' ss Score
11.45
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq A exon
GTGTGAGACACAACGCCCCACCCCAGCCCACACCTACCCCACCTTCACCCCCAACTCCATCCCACCCTCACTCCCAGCCATTAGGACAGCAGCCCCAAACCTTGCACAAGAGTCTCCCAGGCCAAGCTTCAGCATTCCCTTACCTTGAGAGACTAGCTATGTGGTCCTGTCTCTGCAG
Seq C2 exon
GTCACATGTCTCTTGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTCACAGCTCTGATGAAGGCTGCCATTCAAGATCGCTCCGAGTGTGTAGTTGCCCTCCTTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-Ankrd33:NM_144790:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(60.6=100)
A:
NA
C2:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(45.3=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATGGTTGCATGCTACC
R:
ACTACACACTCGGAGCGATCT
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: