HsaINT1003749 @ hg38
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51889067-51889482:+
Coord C1 exon
chr12:51889067-51889196
Coord A exon
chr12:51889197-51889371
Coord C2 exon
chr12:51889372-51889482
Length
175 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
TTACCCTTGCTGCCCTGCAGGCC
3' ss Score
10.49
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
Seq A exon
GTGTGAGGCTGCTGCACCCCACTTCCGACAGCCCCCTTTTGATGCAGACAGGGCCTCAGCCCCACCCTTGTTGCACGGTGTTCTACACCAGACTCTGTCATGCTGGGTGGAGGGCGGTTTGGGAGCTTCATCACCCCCTTTCCTGGGGACCAAGCTTACCCTTGCTGCCCTGCAG
Seq C2 exon
GCCACGTGCCTCTAGTGAGTCTCCTGCTCAACTACTATGTGGGCCTGGACCTGGAACGCCGGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATGCGGAACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612:ENST00000301190:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(33.9=43.8),PF127962=Ank_2=PU(44.7=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCCTCATGGTCGCAT
R:
CCGCATGGCAGCCTTCATTAA
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains