HsaEX6066593 @ hg38
Exon Skipping
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51889067-51891654:+
Coord C1 exon
chr12:51889067-51889196
Coord A exon
chr12:51889372-51889482
Coord C2 exon
chr12:51890584-51891654
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTACCCTTGCTGCCCTGCAGGCC
3' ss Score
10.49
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
Seq A exon
GCCACGTGCCTCTAGTGAGTCTCCTGCTCAACTACTATGTGGGCCTGGACCTGGAACGCCGGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATGCGGAACCGCT
Seq C2 exon
GTGCTGACCTGACAGCAGTGGACCCTGTTCGGGGCAAGACGGCCCTGGAATGGGCAGTGCTGACCGACAGCTTCGACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCCCAAGTGGAGCAGCTTAGCCAGCACTACAAGCCCGAGTGGCCGGCCTTGTCCGGGCTCGTGGCCCAGGCCCAGGCCCAGGCCCAGGTTGCCCCTTCACTCCTAGAACGGCTGCAGGCTACCTTGAGCCTCCCCTTTGCCCCGTCTCCTCAGGAGGGGGGTGTTCTGGACCACCTTGTGACTGCCACAACCAGCCTGGCCAGTCCCTTCGTCACCACTGCCTGCCACACTCTGTGCCCTGACCATCCACCTTCGCTGGGCACCCGAAGCAAGTCCGTGCCAGAGCTGTTAGGTACTGCCCCGCCCCCTCCCCTGGTTCCCCAGTCCCCGCCAGGGAGTCCCCAGAGGTCCCCGTGGGTCTTCGTCCCCTACCAGAGCCCTCAGGGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-'2-8,'2-4,3-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.348
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(21.2=55.3)
C2:
PF127962=Ank_2=PD(53.9=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACGGCTTCCAGAGTGTT
R:
GGGCTTGTAGTGCTGGCTAAG
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains