RnoEX6034142 @ rn6
Exon Skipping
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142757014-142759322:+
Coord C1 exon
chr7:142757014-142757143
Coord A exon
chr7:142757297-142757437
Coord C2 exon
chr7:142758655-142759322
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTCCTGTCTCTGCAGGTC
3' ss Score
11.45
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
Seq A exon
GTCATGTGCCTCTGGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTGACAGCTCTGATGAAGGCTGCCATTCGGGACCGCTCTGAGTGTGTGGTTGCACTCCTTATGGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCTGTTCTAACGGACAGCTTTGACACTGTACGGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCAGAGCAGCTCAGCCTGCACTACCAGCCAGAGTGGCCAGCCTTGGCCCAACTTGTGGCCCAGGCCCAGGATCAGGCTGCCCCATCCCTCCTAGAGAGGCTGCAGGCTACTCTGAACCTCTCCTTTGCTCAGTTTCCTCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGTTTGGCCAGTCCCTTCCTGACCACTGCCTGCCACACACTGTGCCCTGACCACCCACCCACACTGGGCATTCGGGGCAAATCAGTGCCAGAGCTGTTGGGTACTGCCCCTCCACCTCCTCCAGCACCCCATCCTCCTCAGGAAGTCCCTGTTCCCCAGGCCTTTGCCCCCTACCAGAGCCCTCAGAGTATGCTCTCCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733-'2-8,'2-6,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(60.6=100)
A:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(44.7=70.8)
C2:
PF127962=Ank_2=PD(53.9=18.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCATTGTGGCTCTGCTCA
R:
ACTCTGGCTGGTAGTGCAGG
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]