MmuEX6056593 @ mm9
Exon Skipping
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100947008-100950453:+
Coord C1 exon
chr15:100947008-100947137
Coord A exon
chr15:100947316-100947456
Coord C2 exon
chr15:100949431-100950453
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTCCTGTCTCTGCAGGTC
3' ss Score
11.45
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq A exon
GTCACATGTCTCTTGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTCACAGCTCTGATGAAGGCTGCCATTCAAGATCGCTCCGAGTGTGTAGTTGCCCTCCTTATGGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCCGTTCTGACCGACAGCTTTGACACTGCTCAGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCGGAGCAGCTCAGCCTGCATTACCAGCCAGAGTGGCCAGCCTTGGCTCAACTTGTGGCCCAGGCCCAGGCCCAGGCCCAGGCTCCAGCTGCCCCATCCCTCCTAGAAAGGCTACAGGCTACTCTGAGCCTCTCTTTTGCTCAGTCTCCGCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGCTTAGCCAGTCCCTTCCTGAGCACTGCCTGCCACACACTGTGCCCTGATCACCCACCCAAGCTGGGCACTAGAGGCAAATCAGTGCCAGAACTTTTAGGTACTGCCCCTCCGCCACCCCCAGAACCCCACCCTCCTCAGCAAGTCCCTGTCCCCCAGGTCTTTGCCCCCAACCAAAGCCCTCAGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.470
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(60.6=100)
A:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(45.3=70.8)
C2:
PF138571=Ank_5=PD(31.0=17.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCATTGTGGCTCTGCTCA
R:
CACTCTGGCTGGTAATGCAGG
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: