BtaEX6020607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28129660-28131915:-
Coord C1 exon
chr5:28131786-28131915
Coord A exon
chr5:28131467-28131607
Coord C2 exon
chr5:28129660-28130369
Length
141 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTTGGTGCCTTGTAGGCC
3' ss Score
6
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
ACAGGTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq A exon
GCCACGTGTCTCTGGTGAGTCACCTGATCAACTACTATGCAGGCCTTGACCTGGAGCGCCGGGACCAGCGGGGACTGACCGCGCTGATGAAGGCCGCCATGCGGGATCGCTCGGAATGTGTTGCTGCCCTCCTCATGGCAG
Seq C2 exon
GTGCTGACTTGACAGCAGTGGATCCCGTCAGGGGAAAGACCGCCCTGGAGTGGGCATTTCTGACAGACAGCTTCGACACGGTGCAGAGGATCCGGCAGCTGCTGCGGCGGCCCCAAGTGGAGCAGCTCAGCCAGCATTATCAGCCTGAGTGGCCAGCCTTGCCCGGGCTCGTGGCCCAGGCTCAGGCCGCCCCGTCTCTCCTAGAGCGACTGCAGGCCACCTTGACCCTCCCCTTTGTCCAGTCTCCTCAGGAAGGGGGTGTCCTGGACCAACTTGTGACCATCACGACCAGCCTGGCCAGTCCTTTCCTCACCACCGCCTGCCATACCCTGTGCCCTGACCACCCCCCTGCACTGGGAACCCGAAGGAAGTCTGTTCCAGAGCTGCTAGGCACTGCCCCGCCCCCTCCCCCAGCCCCCCAGCCCCCTCAGGAAGTTCCCGGCCCCCGGGTCTTCATCCCCTACCAGAGCCCTCAGGGTGTGTTGAGCATGTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113-'2-4,'2-2,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.401
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
C2:
PF0002325=Ank=PD(24.2=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGAAGGGGACACAGCC
R:
GTCGCTCTAGGAGAGACGGG
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]