DreEX0013317 @ danRer10
Exon Skipping
Gene
ENSDARG00000058357 | ankrd33ba
Description
ankyrin repeat domain 33ba [Source:ZFIN;Acc:ZDB-GENE-040724-39]
Coordinates
chr24:21911212-21914627:+
Coord C1 exon
chr24:21911212-21911341
Coord A exon
chr24:21911506-21911646
Coord C2 exon
chr24:21913325-21914627
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTCGCCAAAACAATTTCAGGTC
3' ss Score
6.44
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
ACTGGACTAATAGTGGCGTGCTACCAAGGCTATGTGGATGTAGTGATGGCTCTCTCCCAGTGTCCTCATCTGGATGTGAACTGGTCAGACAACGAGGGCAACACAGCCCTCATCACTGCTTCCCAGGCAG
Seq A exon
GTCACATCACAATCTGTAACTACCTACTCAACTATTTTCCTGGGCTTGACATCGAGAAGAGGAACTGCCATGGTTTCAGCGCTCTGATGAAAGCTGCTATGCAGGGTCGAGTGGAGTGTGTCAAAGCACTGATGATGGCAG
Seq C2 exon
GGGCTGATTTGGAAGCAAGGGACAACGGGCGGAAGTTCACAGCTCGAGAGTGGGCCATCTTCACCAGCCGACACGAGACCGTCTTAACCATTATGCGGCTCATGCATCAGCCATGTGCAGATCAGTTCTGTGACAGCTATCGACCCGAATGGCCCCTTCTACCCGCACTGGTGGCCAAAGCACAGGCTCCCAAAGGCTGCATCCAAAAAATCTCAGAGACACTACGCGACTTCTTTGACATCAGCAACGTCACGGAGGCTTCAGAGGACGGTGTTCTCGATCACATGGTACGCATGACCACAGCGCTAGGCAGTCCATTCATTGCGACGTCATGTCGAACGGTGTGTCCTGGCAGCCCACCATGTGTGGGCAAACGTCGTTATGCTGTTCAGGAGATATTAAAAAAGCGACGCATTGAGCAGCTTAAAATACTCGGACCTGAACGCATCGAGAACTATAAACGTCTTTTTCAGAACTCCCGCGTCCTGCTGGTGCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058357-'1-3,'1-0,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(42.7=93.2)
A:
PF127962=Ank_2=FE(49.0=100)
C2:
PF127962=Ank_2=PD(68.3=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGACAACGAGGGCAACAC
R:
TTTGGATGCAGCCTTTGGGAG
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]