RnoEX0009641 @ rn6
Exon Skipping
Gene
ENSRNOG00000010888 | Ankrd33b
Description
ankyrin repeat domain 33B [Source:RGD Symbol;Acc:1564227]
Coordinates
chr2:84361061-84394099:-
Coord C1 exon
chr2:84393970-84394099
Coord A exon
chr2:84373158-84373298
Coord C2 exon
chr2:84361061-84362226
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATGTATAATTCTCTTTCAGGGC
3' ss Score
9.51
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGGCCTTATTATTGCGTGCTACCATGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGTCCCCACATCGACGTCAACTGGCAGGACAGCGAAGGGAACACAGCCCTGATCACTGCTGCCCAAGCAG
Seq A exon
GGCATGCCACCATCACCAACTACTTGCTGAATTATTTCCCCGGTCTGGACCTAGAAAGGAGGAACATATTCGGCTTCACAGCTCTCATGAAGGCAGCCATGCAGGGTAGAACAGAATGTGTGCGAGCCCTGATGCTAGCAG
Seq C2 exon
GGGCAGACGTTCAAGCAAGGGATCCCCGACGTGGGCTGTCACCTCAGGAGTGGGCTGCATACACAGGCCGAGCGGAGGCTGTTCGAGTCATGCAGAGGCTGATGGAGCGACCCTGCCCAGAACAGTTTGGGGACAAGTATAAGCTGGAATTGCCACTTCCCGCTGAGACGATCTTAAAGAAGGCAGGTTCCAAAAACTGCTTGCAGAGATTCACCGCATTCCTGCGATCTACTTTGACCTCCCGCTCCGGCCAGAGCCTGGAGGATGGAGGCGTCCTTGATCACATGGTCAGGATGACCACAAGTCTCTACAGCCCCGCTGTTGCTGTAGTCTGTCAGACCGTGTGCCCGGAGAACCCACCCTGTGTGGGGAAACGACGCTTGGCGGTACAGGAAATCCTAGCAGCTAGGGGCAACCTGGACGCCCAAGCGCAGGACAGCAACAACGTAGAGCTGCAATCCCAGATTTTGGAGACTCCCAGAGCTAGCTCCCGGTCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010888_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.415
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(21.2=43.8),PF127962=Ank_2=PU(46.5=68.8)
C2:
PF127962=Ank_2=PD(52.1=13.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACAGCCCTGATCACTG
R:
CGGTGAATCTCTGCAAGCAGT
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]