HsaEX0004472 @ hg19
Exon Skipping
Gene
ENSG00000164236 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:35240]
Coordinates
chr5:10618445-10650308:+
Coord C1 exon
chr5:10618445-10618574
Coord A exon
chr5:10638140-10638280
Coord C2 exon
chr5:10649378-10650308
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTACACTTCTCTTTACAGGGC
3' ss Score
10.52
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACCGGCCTTATTGTCGCCTGCTACCACGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGCCCCCACGTTGACGTCAACTGGCAGGACAGCGAGGGGAACACAGCCCTAATCACAGCTGCACAGGCAG
Seq A exon
GGCACGCTATCATCACTAACTACTTGTTGAACTATTTCCCTGGTCTTGACCTTGAAAGGAGGAACGCGTTCGGGTTCACCGCCCTGATGAAAGCCGCCATGCAGGGTCGAACGGACTGCATCCGAGCCCTGATGCTAGCAG
Seq C2 exon
GGGCGGATGTCCACGCGAGGGACCCCCGCCGTGGGATGTCGCCGCAGGAGTGGGCCACTTACACGGGCCGCGTGGATGCCGTCCGTCTCATGCAGAGGCTGCTGGAGCGCCCCTGCCCGGAGCAGTTCTGGGAGAAGTACCGGCCCGAGCTGCCGCCGCCCCCTGAAGCGGCGCGGAAGCCCGCGGGCTCCAAGAACTGCCTGCAGAGGCTCACAGACTGCGTGCTGTCCGTGCTGACGCCGCGCTCCGTGCGGGGCCCGGAGGACGGGGGCGTCCTGGACCACATGGTCCGGATGACCACGAGCCTCTACAGCCCCGCCGTGGCCATCGTGTGCCAGACCGTGTGCCCTGAGAGCCCTCCGAGCGTGGGGAAGAGGCGGCTGGCGGTGCAGGAGATCCTGGCGGCGCGGGCTGCACGGGGCCCCCAGGCGCAGGAGGAGGATGAGGTGGGGGGCGCGGGGCAGCGCGGGCGGACCGGACAGGAGGACGCGGACTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164236_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.720
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0),PF107844=Plasmid_stab_B=PU(46.9=47.9)
C2:
PF0002325=Ank=PD(24.2=2.8),PF107844=Plasmid_stab_B=PD(51.0=8.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAACACAGCCCTAATCA
R:
CTCTGCAGGCAGTTCTTGGAG
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)