MmuEX0005114 @ mm10
Exon Skipping
Gene
ENSMUSG00000022237 | Ankrd33b
Description
ankyrin repeat domain 33B [Source:MGI Symbol;Acc:MGI:1917904]
Coordinates
chr15:31291479-31325215:-
Coord C1 exon
chr15:31325086-31325215
Coord A exon
chr15:31304992-31305132
Coord C2 exon
chr15:31291479-31297984
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTGTCCAATTCTCTTTCAGGGC
3' ss Score
11.47
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGGCCTTATTGTTGCGTGCTACCATGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGTCCCCACGTTGACGTCAACTGGCAGGACAGCGAAGGGAACACAGCCCTGATCACTGCTGCACAGGCAG
Seq A exon
GGCATGTCACCATCACCAACTACTTGCTGAATTATTTCCCTGGTCTGGACCTAGAAAGGAGGAACATATTTGGATTCACGGCCCTCATGAAAGCGGCCATGCAGGGCAGAACGGAATGTGTGCGAGCCCTTATGATGGCAG
Seq C2 exon
GGGCAGATGTTCAAGCAAGGGATCCCCGTCGTGGGCTGTCACCACAGGAGTGGGCTGCGTACACAGGCCGAGCGGAGGCTGTTCGCGTCATTCAGAGGCTGATGGAGCGACCCTGTCCAGAGCAGTTTGGGGACAAGTACAAGCTGGAATTGCCACTTCCCGCTGAGGCGGTTTTGAAGAAGTCAGGTTCCAAAAACTGCTTGCAGAGATTCACCGCGTTCCTGCGGTCCACTCTGACCTCTCGCTCCTCAGGCCAGAGCCTGGAGGATGGGGGCGTCCTTGATCACATGGTCAGGATGACCACGAGCCTCTACAGTCCCGCTGTTGCTGTAGTCTGTCAGACAGTGTGCCCTGAGAACCCTCCCTGTGTGGGGAAACGACGCTTGGCGGTGCAGGAAATCCTAGCAGCTAGGGGCAACCTGAACGCCCAAGCGCAGGACAGCAACAAGGTAGAGTGCTCTGAGCCACAATCCCAGATTTTGGAGACTCCCAGAGCTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022237-'10-7,'10-6,17-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.433
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(47.8=100)
A:
PF127962=Ank_2=PD(23.3=43.8),PF127962=Ank_2=PU(47.1=68.8)
C2:
PF127962=Ank_2=PD(51.4=12.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACAGCCCTGATCACTG
R:
CGGTGAATCTCTGCAAGCAGT
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types