DreEX0013315 @ danRer10
Exon Skipping
Gene
ENSDARG00000055638 | ankrd33aa
Description
ankyrin repeat domain 33Aa [Source:ZFIN;Acc:ZDB-GENE-080520-2]
Coordinates
chr23:27936266-27942103:-
Coord C1 exon
chr23:27941974-27942103
Coord A exon
chr23:27941757-27941897
Coord C2 exon
chr23:27936266-27937000
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTAAGTTTAAATGTTGCAGGTT
3' ss Score
4.59
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGGTCTGATGCTGGCAGTCTCAAAAGGCTTTGTGGATATTGTGTATGGACTCAATCAGTGCCCATTTCTGGATATCAATCATCAGGATAATGATGGCAACACTGCACTTATGATCGCCGCACAAGCTG
Seq A exon
GTTTCGTAACCATCCTCACTTACATCATCAATTTCTTCCCTGGACTTGACATGGAGCTCCGGGATAACAGAGGCTTCACGGCTCTCCTCAAGGCAGTCATGCAGGGCAGCAATGACTGTGTGGCGTCACTGCTCATGGCTG
Seq C2 exon
GGGCCAATCTTCATGTTGTGGATGCCACAAGAGGCAAGGACATCCGAGAGTGGGCTCTGAAGACAGGTCGCTTTGAGACATTACACAGGCTCAGACGGCTGAACAGCAGGCCTCAGGCTGAACAATTCTGTGAAAAATACATCCTGGAGTGGCCAGACCTGAAGGAGCTGGTGGCCAAAGCCACAGCCACAAAAAGCACAGGACAAAAAGTCGCCCATCGCCTCAAGTCAACGTTCACTTTCAACTTTCCACATGACCCCCAGGACAATGGTATCATGGACCATATGGTGCGTATGACCACAAGCATCCATAGTCCCCTGGTGGTCACAGGATGCCGTCCGCTGTGTCCCTCAAGCCCACCAGAGGTGGGCAAGAGACGCCTAGCGGTGCCTGAACTGATGGAAATGCATTCAGGGAAAAAGCTTGAGGAGCACACAATACGACACAGCAATGGCTCCATCTCTGTGGCGTCTACATCTGGCTCTTCTGTCTCGCTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055638-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.363
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
C2:
PF0002325=Ank=PD(24.2=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCACTTATGATCGCCG
R:
CGATGGGCGACTTTTTGTCCT
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]