HsaINT0008883 @ hg38
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51889372-51891654:+
Coord C1 exon
chr12:51889372-51889482
Coord A exon
chr12:51889483-51890583
Coord C2 exon
chr12:51890584-51891654
Length
1101 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCCCCTGTGCTCCTTCCCAGGTG
3' ss Score
11.37
Exon sequences
Seq C1 exon
GCCACGTGCCTCTAGTGAGTCTCCTGCTCAACTACTATGTGGGCCTGGACCTGGAACGCCGGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATGCGGAACCGCT
Seq A exon
GTGAGTGCGTGGCCACCCTCCTCATGGCAGGTGTGCGGGGCCTGGACCGGGGTGTGTGGCCTCCAGTCCCTCCTCCAAGCCTTCCCACCAGACACTAAGTCAGCTGTGATTATTTGCAGAAAGGAGAGAGGTGGAGATGGGGGATCAATCTAGTTCACCTTCCTGGAGGGGGGGGCACATGATTTGGGCTTCGTACAATCAACCAAGTCCTGCTATTGATAGCTCAGACATTGTGTGTGGAGGTCCCAGGAAGGAAAGTGTGGGAGGGGAACCTAGCCCAGCTGGAAAATCTAACACGAAAAAAGGCTGGCATCTGGAACCAGCCCCTGTTCCTAGCTGAGTGGCTTCCCTCTTTGGGCCTCACCAGTATTGTGAGGGTGTTAGCTTTCCCTGGGACTACCTCCAACTCTGACAAGCCAGGCTTCCAGGGGATCCAGGGAAGTGTCGTTGAGGCCTGTGGCTCTGTGGGGTCGTTCAGGGGGAGGTGCGGTGAAGTCCACATTGTCCATGGAGTTGTTTGGGGGCCCTTCTTCCCCGCAGTGGGGCTGCCCTCTGCTGGTCACTCTGGGGGACCCCTGCCTCCATTTTTCCCTTCCCCACACACCCCACTGGGTTTGGAGTGAAAAAGGAGTGAATGAAAAAGGAGGGCGCTCTACACCCTTTCTTTTGTCTTAGAGTGACTGCTCCTCCCACAACCCCAAGATGGGAGAGGGAGATGGTGAGAAGAGAAGAACCAGGAGAGGGAACCAGCCGATCATCCCCACCCACCTGCCCCAGAGGGTGCAGCTCAGGCCTCTGCCTGTCCTGGGCAGCCTGCACCGCTGCTCTGCTCAGCTCCTTGGATTGAGGAGATCCCTATTCTGCCCTAGGTGGAGCCCCACAATAGGTCTCTCTGAAGTCTTTTCCCCTCTCTGGACCTAAGTGTCTTAATCTCTCTTAAACAGGAGGTTGCAACACTGGCCTCCCTGATTCCACCTTCAACAGGATGGGACTCTATGGCTTCGAATGTAACCCACATCAGTCTTGCTCCTAAAGAATCTGCCCTTCCACAAATCACCAACCCCTATCCCGCCCCATGTCACCCCCTGTGCTCCTTCCCAG
Seq C2 exon
GTGCTGACCTGACAGCAGTGGACCCTGTTCGGGGCAAGACGGCCCTGGAATGGGCAGTGCTGACCGACAGCTTCGACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCCCAAGTGGAGCAGCTTAGCCAGCACTACAAGCCCGAGTGGCCGGCCTTGTCCGGGCTCGTGGCCCAGGCCCAGGCCCAGGCCCAGGTTGCCCCTTCACTCCTAGAACGGCTGCAGGCTACCTTGAGCCTCCCCTTTGCCCCGTCTCCTCAGGAGGGGGGTGTTCTGGACCACCTTGTGACTGCCACAACCAGCCTGGCCAGTCCCTTCGTCACCACTGCCTGCCACACTCTGTGCCCTGACCATCCACCTTCGCTGGGCACCCGAAGCAAGTCCGTGCCAGAGCTGTTAGGTACTGCCCCGCCCCCTCCCCTGGTTCCCCAGTCCCCGCCAGGGAGTCCCCAGAGGTCCCCGTGGGTCTTCGTCCCCTACCAGAGCCCTCAGGGCATATTGAGCAAGTGCCTTCAGTGGCTACAACCCAGGGATAGCACCAGCCCCAGGCCCCAAGTCCCCAAGATCCTCCTCTCCAAGGCATCCTCATCCTCCCACCAGTGCCAGCCGAAGCCCAGTCCTTCAGGACACCAAAGTCTGGCCCTTCCTCTCTGGCGATACCAGGAGCTCAGGATAGAGAAGAGGAAACAGGAGGAGGAGGCCAGAATGGCACAGAAGTAGGGGAAGATGGGATAGGACAGGCTGGGAACAGGTAATCAGGCCCCTCCCAGGGCTTCTTTCCCCTCTGGAGTGCCTCCGGCCTCCCCATCCACCTCTGCCTAAGTAAATCTGCTCTCAACCTATATATATACAAGGTCATTCATTCTAGCATTGTTTGCAAGAGTGAAAGAGTGGAAACACCCGAAGTGTCCATCAGTAAGGGACAGGCTAGATTGATTACGGATGTAATTGCTGTCCATCCATACAGAGCATACTCTACAGTGTATTCTAAAATAAGACTAAGGAAGCTGTTTATATTCTGATATGAAACTACCATCAAGATGTATAAAGTAAAAATAACTAAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612:ENST00000301190:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.348
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.9=43.8),PF127962=Ank_2=PU(44.7=70.8)
A:
NA
C2:
PF127962=Ank_2=PD(53.9=30.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTAGTGAGTCTCCTGC
R:
AAAGGGGAGGCTCAAGGTAGC
Band lengths:
353-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development