RnoINT0017830 @ rn6
Intron Retention
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142757297-142759322:+
Coord C1 exon
chr7:142757297-142757437
Coord A exon
chr7:142757438-142758654
Coord C2 exon
chr7:142758655-142759322
Length
1217 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCACACTGGGTCACTTGCAGGTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
GTCATGTGCCTCTGGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTGACAGCTCTGATGAAGGCTGCCATTCGGGACCGCTCTGAGTGTGTGGTTGCACTCCTTATGGCAG
Seq A exon
GTGTGCTGTGGCAGGTGTGTGTGGCAGGTGTGGTATGACAGGTGTGCTATGGCAAGTGTGCTGTGGCAGGTGTGCTATGGCAGATGTGGTATGACAGGTGTGGTATGGCAGGTGTTGTATGGCAGGTGTGGTATGACAGGTGTGCTATGGCAGGTGTTGTATGGCAGGTGTGGTATGACAGGTGTGCTATGGCAGGTGTTGTATAGCAGGTGTGCTATGACAGGTGTTGTATGGCAGGTGTGCTATAGCAGGTGTGCTATGGCAGGTGTTGTATGGCAAGTGTACTTACAGCAGGTGTGCAGTCGCACCTTCTCCACTACCACCCCACCAGATACATTTACTTGCAGCCAGAGAGGTGGGAATGAAATATGAATGGAGGACAACTTATTGAAGGAAGGCCGTGCTCCCATCCTCTCACAGTCTACTAGTGCAGCTATGCACAGCTGTTTATGGAAGTCCCAGCAAAGAGTGCAGACATAAGATGGGGAAAGGTTGGGGTGAGGTGGTATGAGTTCTAGTCCCAGTCTTGCCTCTGCCTGAGATCCAGGTGGAGAAATACAACCACAGCACTATGAAGGCTGATGAGTGGGGCATCCGTGAGGACTGACTCTAACTCTTAGGCAGTGTTCAGTTGCAACTGGAGCTTTGTGTGCAAAGGGCTGCTCTGTGTGTGGACTTGTGGAGCCCTCATTATTCCCTGAGGTGGCTGATCTCTGGTGCCCTCTGCTGGTCTCTCTGAGAGATCTCTGCCTCCAGCCTTCCCTTCCCAACCCCAGTAGATTTAGCAGGAAAGTAAGAGAACCACATGTCTTTCTCCTTTCAGAGTGACTGTGTCTCTCTGGCCCCAGAGACCCAGAGACAAGGGCGTGAGCATGAAGAAACAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGGTGGGGAAGAACAGGACCCTGACCCCAAGCAGCTGCGGCTTGAGCATCCTACGCTCCGCTCTGCTCAGCCAGCTCTGTGAGCCTGTTGGAGACCCTGTGGGCTCACGTGGGCTCACTGCAAGGTTCCCCCAGTCCTGACTTTGGTGCTCCCTGTCTCTTATACAGAAGGCTGCAGCCCTGGGCTTTTGAATCTGGCTTAAATCAGTCCTGCTGCTGAAGAATGTGCCCTTGTACAACCCAAGGCTCGCTAACCAATCACACTGGGTCACTTGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCTGTTCTAACGGACAGCTTTGACACTGTACGGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCAGAGCAGCTCAGCCTGCACTACCAGCCAGAGTGGCCAGCCTTGGCCCAACTTGTGGCCCAGGCCCAGGATCAGGCTGCCCCATCCCTCCTAGAGAGGCTGCAGGCTACTCTGAACCTCTCCTTTGCTCAGTTTCCTCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGTTTGGCCAGTCCCTTCCTGACCACTGCCTGCCACACACTGTGCCCTGACCACCCACCCACACTGGGCATTCGGGGCAAATCAGTGCCAGAGCTGTTGGGTACTGCCCCTCCACCTCCTCCAGCACCCCATCCTCCTCAGGAAGTCCCTGTTCCCCAGGCCTTTGCCCCCTACCAGAGCCCTCAGAGTATGCTCTCCCAGTGGCTACAGTCCAGGGAGAGCACCAGTCTCAGGTCCCAAGTCCCTAAGATCCTCCTCTCCAAGGCACCTTCCCCTGCTGCACAGTACGAGTTGATACTTAGACCTCCAGGGAAGCAAAGTCTGACTCTTCCCATCTGGAGATTCCAGGAGAAGAAGAAGAAGGAGGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733:ENSRNOT00000071298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(44.7=70.8)
A:
NA
C2:
PF127962=Ank_2=PD(53.9=18.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACTACTTTGCTGGCCT
R:
AGTAGCCTGCAGCCTCTCTAG
Band lengths:
343-1560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]