BtaINT0018442 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28129660-28131607:-
Coord C1 exon
chr5:28131467-28131607
Coord A exon
chr5:28130370-28131466
Coord C2 exon
chr5:28129660-28130369
Length
1097 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
CTGTGCCCCCCACCCCCCAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
GCCACGTGTCTCTGGTGAGTCACCTGATCAACTACTATGCAGGCCTTGACCTGGAGCGCCGGGACCAGCGGGGACTGACCGCGCTGATGAAGGCCGCCATGCGGGATCGCTCGGAATGTGTTGCTGCCCTCCTCATGGCAG
Seq A exon
GTGCATGGGGTCTGGATCAGGATCAGTGGCCTCGAGTCCCTCCCCCATCCCTCCCCACCAGCACTGCGTGCTGTCATAGTTGCAATGAGAGAGATGGGGAAAGAAGGTCAATCCAGGCTGACCTCCTGGAGTTGGGGGGAGTGTGCTGGGGCTTCTGACAAAGCGTCTAGCTATTGAGAGCTCTGTTTACACTGTGAATGATGGTCCCAGAAAAGAAAGCTTGGGAGGATAACTGGACCAGCTAGATAACCTAATACCAAAAAAAAAGCTGGAGTCTGGAACCAGATTCTCGAGTTCTCATCCCGGCTCTGCCACCAGCTGAGTGACTGTGGGCAAACAGCTTTCCTCTGTGAGCCTACCCAGTGTAACGAGAACTATGGCCTTCTTTGGGTTTCCAGCTCTGAGGAGCCAGGGTTCCAGGGATGCAGTGATGGGCAGTTGAGACGTAGGGGCAGTGTAGAGTTGTTCTGGGGTGAAGTCCACATGGTCTGTGGAGTCTCAGACCCTCATTACTCCATGAGGTGGGTCTACCCTCTGTTGTTCACTCTGGGGATCCCCAGCCTCCAGCTTTTCCCTTCCCCGTTGCATCAGACTGGGTTTGGGCTGAGAAGGTCTGCACCCCCTCCTTTGTTTCAAAGTGACAGCCACTCCCTGCTTCCCAGGATTAGGGGCGTGTGGTGGTGAAGGGAGGAACCAGGAGTGGGAACTAGCAGGATCCCCCCTACCTGCTCCAGGGGGTGCAGCTTGACCCCCCCCATTCTGGGCAACCTGTACACCATCCCTCTGGTCAGTGCCTTAGCTCAGGGGGTCTCTGTTCTACACCAGGTTTGGAGATCCCCCCAGTAGGTCTCTCTGAAATCTTTTCCCCTCGCTGGACTCCAATTTCTTCATCAGTCCTAAACCAGAAGTTGAATCTGGGGCTGGTACTGACCCTGGGCTGTAGCCACTGAGGATCCTCAGCTTCCAGCTGCAACAGCATGAGACACTATGGTTTTGCATCTAACCCAAATCAGTCCTACCACTGAAGAATCTGTCCTTCTGCAAGTCAGCAATTCCCTGTCCCACCGCATGACACTCCTGTGCCCCCCACCCCCCAG
Seq C2 exon
GTGCTGACTTGACAGCAGTGGATCCCGTCAGGGGAAAGACCGCCCTGGAGTGGGCATTTCTGACAGACAGCTTCGACACGGTGCAGAGGATCCGGCAGCTGCTGCGGCGGCCCCAAGTGGAGCAGCTCAGCCAGCATTATCAGCCTGAGTGGCCAGCCTTGCCCGGGCTCGTGGCCCAGGCTCAGGCCGCCCCGTCTCTCCTAGAGCGACTGCAGGCCACCTTGACCCTCCCCTTTGTCCAGTCTCCTCAGGAAGGGGGTGTCCTGGACCAACTTGTGACCATCACGACCAGCCTGGCCAGTCCTTTCCTCACCACCGCCTGCCATACCCTGTGCCCTGACCACCCCCCTGCACTGGGAACCCGAAGGAAGTCTGTTCCAGAGCTGCTAGGCACTGCCCCGCCCCCTCCCCCAGCCCCCCAGCCCCCTCAGGAAGTTCCCGGCCCCCGGGTCTTCATCCCCTACCAGAGCCCTCAGGGTGTGTTGAGCATGTGCCCTCAGTGGCTCCAGCCCAGGGATAGTACCAGCCCCAGGCCCCGAGCCCCCAAGATCCTCCTCTCCAAGGCACCCTCCGCTGGCTTTCAGTGGAAGCCAGAGCTCAGGTCTTCAGGGAACCGAAGGCTGTCCCTTCCTGTCTGGAGATACCAGGAGCTCAGGATGGAGAGGAAGAGACAGGAGGAGGCCGGATTGACACAGAGCCAGGGGAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113:ENSBTAT00000022764:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.401
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
A:
NA
C2:
PF0002325=Ank=PD(24.2=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCAGGCCTTGACCTGGAG
R:
TGAGGAGACTGGACAAAGGGG
Band lengths:
356-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]