MmuINT0015653 @ mm10
Intron Retention
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:101116885-101120022:+
Coord C1 exon
chr15:101116885-101117025
Coord A exon
chr15:101117026-101118999
Coord C2 exon
chr15:101119000-101120022
Length
1974 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCACACTGCGCCACTTGCAGGTG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCACATGTCTCTTGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTCACAGCTCTGATGAAGGCTGCCATTCAAGATCGCTCCGAGTGTGTAGTTGCCCTCCTTATGGCAG
Seq A exon
GTGTGCAATGGCAGGTGTGCAATGGCAGGTGTACTATGCCATATGTGCTTTGCCAGGTGTGCTATGGCAGGTGTGCAGTGGCAGGTGTTCTCTGCCAGGTGTGCGCTGGCAGGTGTGTTCTAGCAAGTATGCTCTGACATGTGTACTATGGCAGGTTGCTATGAAAAATGTGCTGTGGCAGGTGTGCTGTGGGAGGTGTGCTGTGGGAGGTGTGTAATGGCAGGTGTTGTATGGCTGCTCATGTAGGTGTGAGACACCACACTCCCACCTCATCCCACAGCAATCCCACCCTTACCCCCAACTCCACCCCATCCCCACTCCCAGCCATTAGGGCCACAGCCCCTGTGCTATGGCAGGTATACTATGGCAGGTCTGCTATGGAAGGTGTAATATGTATGGCAGGTGTGTAATAGCAGATGTGCTATGGCAGGTGTGCTATGATAAATGTGCTGTGGCAGGTGTTCTCTGGCTGGTATGTAATGGCAGGTGTGTTATGGCAGGTGTGTTATGGCAGGTGTGAAGCTGCACTTTCTCCACTACCACCCCAGCAGATACCATTTAGCTACAGCAAGAGAGGTGGAGCCGGGCAGTAGTAGTGCATGCCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGATTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAACAAAAACAAAAACAAAGAGAGATGGGAATGGAATATGGATCGAGGCCAACTTATTGGAGGAGGCCCGTGCTACCACCCTCTCACAGTCTACTAGTGCAGTTAGCTACAGCTGTTTATGGGGGTCCCAGCAAAGAGTGTAGACATAAGATGGGGAAAGGTGTGAGGGTGTGGTGGTACCTAAAACCAGACTCTTGAGTTCTAGTCCCAGCCTTGCCTCTGCCCGAGGCCCGGGCGGAGAAAGATGGCCACAGCACTGTGAAGGTTGATGGATGGGGTATCCGTGAGGACTGATTCCAACCTTAGGCAGTATTCAGTTGCAGCTGGAGCCTTGCATGGGGAGGAGGACCACTCTCTGTGTGTGGAAGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTAGAGGACCACTCTGTAGGTGGAAGACCACTCTGTGTGTGTAGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTCTGGAGGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTAGAGGACCACTCTGTAGGTGGAAGACCACTCTGTGTGTGTAGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTCTGGAGGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTGGAGGATCACTCTGTGTGTGGAGGGCCACTCTGTGTGTGTGGAGGATCACTCTGTGTGTGGAGGACCACTCTGTGTGTGAAGGACCACTCTGTGTATGGTCTTGTAGAGCCCTTCTTACTCCCTAAGGTGACTGATGGTGCCCTCTACTGGTTTCTCTGAGAAATCTCTGCCTCCACCTTTTCCCTTCCCAACCCCCGTGGGTGTTTCAGAGTGACTGTCTCTCTGGCCCCAGAGACAAGGGCATGAGAATGAAGAAACAAAATGGGAGGGGTCCAGCAACGGGGCACTGCCCCCAAGCAGCTGTGTCTTGAGCATACTATGCTCCACCCTGCTAGGGTGGCTCTGCGAGCCTGCTGGAGACCCCGTTTGCTCACTGCAAGGTTCCCCCAGTCCTGACCTTGGTAGCTTCCTGTCTCTTATACAGAAGTCTGCAGCCCTGGGCTTTCAGTCTGTGAGGTGTTTTGAATCTGGCTTAAATCAGCCCTGCTGCTGTAGAACGTGTCCTTGTACAGCCCGTGGCTCACTAACCAATCTGTCACACTGCGCCACTTGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCCGTTCTGACCGACAGCTTTGACACTGCTCAGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCGGAGCAGCTCAGCCTGCATTACCAGCCAGAGTGGCCAGCCTTGGCTCAACTTGTGGCCCAGGCCCAGGCCCAGGCCCAGGCTCCAGCTGCCCCATCCCTCCTAGAAAGGCTACAGGCTACTCTGAGCCTCTCTTTTGCTCAGTCTCCGCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGCTTAGCCAGTCCCTTCCTGAGCACTGCCTGCCACACACTGTGCCCTGATCACCCACCCAAGCTGGGCACTAGAGGCAAATCAGTGCCAGAACTTTTAGGTACTGCCCCTCCGCCACCCCCAGAACCCCACCCTCCTCAGCAAGTCCCTGTCCCCCAGGTCTTTGCCCCCAACCAAAGCCCTCAGAGTATGTTTTCCCAGTGGCTACAGTCCAGGGACAGCACCAGGTCCCAAGTCCCTAAGATCCTCCTCTCTAAAGCACCCTCCCCTTCTGCACGGTATGAGCTGACACTCAGGCCTCAGGGGCAGCAAAGTCTGGCTCCTCCAGTCTGGAGATTCCAGGAGAGGAAGAAGAAGGAGGAAGAAACAGAACCACGAGGAGGTGGGCTGGGCCAAGCTGGAGGCAGCAAGTAAGACACATTCCCCGCCAGGGCCTCTTTCTGCTTCCCAGCTATCTCTGCCAGCGGGAACCTGCTCCCACCAAGTATACACGGTTGTCCACAGCAGCGTCTGCAGCAGAGAAGGGACCAACCCAGTGTCTGCAGGCAGGGGACTGGCTGGCTACAGTGGTTATGGTAGTGATACCCACGCTGTATTCTGTGTAGGTCGTCCTAAAGCAAGGGAAAGCAAACTGCTCTCACATGAAATCTCCAAGTTGTATCAAATAAATAGCTGAGGCTAGGGAGGCGTGCATGGCATACCGTTCATCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034:ENSMUST00000070875:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.521
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(45.3=70.8)
A:
NA
C2:
PF127962=Ank_2=PD(53.3=16.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACTACTTTGCTGGCCT
R:
CTTTCTAGGAGGGATGGGGCA
Band lengths:
342-2316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types