Special

MmuINT0015653 @ mm9

Intron Retention

Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100947316-100950455:+
Coord C1 exon
chr15:100947316-100947456
Coord A exon
chr15:100947457-100949430
Coord C2 exon
chr15:100949431-100950455
Length
1974 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCACACTGCGCCACTTGCAGGTG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCACATGTCTCTTGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTCACAGCTCTGATGAAGGCTGCCATTCAAGATCGCTCCGAGTGTGTAGTTGCCCTCCTTATGGCAG
Seq A exon
GTGTGCAATGGCAGGTGTGCAATGGCAGGTGTACTATGCCATATGTGCTTTGCCAGGTGTGCTATGGCAGGTGTGCAGTGGCAGGTGTTCTCTGCCAGGTGTGCGCTGGCAGGTGTGTTCTAGCAAGTATGCTCTGACATGTGTACTATGGCAGGTTGCTATGAAAAATGTGCTGTGGCAGGTGTGCTGTGGGAGGTGTGCTGTGGGAGGTGTGTAATGGCAGGTGTTGTATGGCTGCTCATGTAGGTGTGAGACACCACACTCCCACCTCATCCCACAGCAATCCCACCCTTACCCCCAACTCCACCCCATCCCCACTCCCAGCCATTAGGGCCACAGCCCCTGTGCTATGGCAGGTATACTATGGCAGGTCTGCTATGGAAGGTGTAATATGTATGGCAGGTGTGTAATAGCAGATGTGCTATGGCAGGTGTGCTATGATAAATGTGCTGTGGCAGGTGTTCTCTGGCTGGTATGTAATGGCAGGTGTGTTATGGCAGGTGTGTTATGGCAGGTGTGAAGCTGCACTTTCTCCACTACCACCCCAGCAGATACCATTTAGCTACAGCAAGAGAGGTGGAGCCGGGCAGTAGTAGTGCATGCCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGATTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAACAAAAACAAAAACAAAGAGAGATGGGAATGGAATATGGATCGAGGCCAACTTATTGGAGGAGGCCCGTGCTACCACCCTCTCACAGTCTACTAGTGCAGTTAGCTACAGCTGTTTATGGGGGTCCCAGCAAAGAGTGTAGACATAAGATGGGGAAAGGTGTGAGGGTGTGGTGGTACCTAAAACCAGACTCTTGAGTTCTAGTCCCAGCCTTGCCTCTGCCCGAGGCCCGGGCGGAGAAAGATGGCCACAGCACTGTGAAGGTTGATGGATGGGGTATCCGTGAGGACTGATTCCAACCTTAGGCAGTATTCAGTTGCAGCTGGAGCCTTGCATGGGGAGGAGGACCACTCTCTGTGTGTGGAAGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTAGAGGACCACTCTGTAGGTGGAAGACCACTCTGTGTGTGTAGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTCTGGAGGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTAGAGGACCACTCTGTAGGTGGAAGACCACTCTGTGTGTGTAGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTGCATGGAGGACCACTCTGTGTCTGGAGGACCACTCTGTGTGTGTGGAGGACCACTCTGTGTGTGTGGAGGATCACTCTGTGTGTGGAGGGCCACTCTGTGTGTGTGGAGGATCACTCTGTGTGTGGAGGACCACTCTGTGTGTGAAGGACCACTCTGTGTATGGTCTTGTAGAGCCCTTCTTACTCCCTAAGGTGACTGATGGTGCCCTCTACTGGTTTCTCTGAGAAATCTCTGCCTCCACCTTTTCCCTTCCCAACCCCCGTGGGTGTTTCAGAGTGACTGTCTCTCTGGCCCCAGAGACAAGGGCATGAGAATGAAGAAACAAAATGGGAGGGGTCCAGCAACGGGGCACTGCCCCCAAGCAGCTGTGTCTTGAGCATACTATGCTCCACCCTGCTAGGGTGGCTCTGCGAGCCTGCTGGAGACCCCGTTTGCTCACTGCAAGGTTCCCCCAGTCCTGACCTTGGTAGCTTCCTGTCTCTTATACAGAAGTCTGCAGCCCTGGGCTTTCAGTCTGTGAGGTGTTTTGAATCTGGCTTAAATCAGCCCTGCTGCTGTAGAACGTGTCCTTGTACAGCCCGTGGCTCACTAACCAATCTGTCACACTGCGCCACTTGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCCGTTCTGACCGACAGCTTTGACACTGCTCAGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCGGAGCAGCTCAGCCTGCATTACCAGCCAGAGTGGCCAGCCTTGGCTCAACTTGTGGCCCAGGCCCAGGCCCAGGCCCAGGCTCCAGCTGCCCCATCCCTCCTAGAAAGGCTACAGGCTACTCTGAGCCTCTCTTTTGCTCAGTCTCCGCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGCTTAGCCAGTCCCTTCCTGAGCACTGCCTGCCACACACTGTGCCCTGATCACCCACCCAAGCTGGGCACTAGAGGCAAATCAGTGCCAGAACTTTTAGGTACTGCCCCTCCGCCACCCCCAGAACCCCACCCTCCTCAGCAAGTCCCTGTCCCCCAGGTCTTTGCCCCCAACCAAAGCCCTCAGAGTATGTTTTCCCAGTGGCTACAGTCCAGGGACAGCACCAGGTCCCAAGTCCCTAAGATCCTCCTCTCTAAAGCACCCTCCCCTTCTGCACGGTATGAGCTGACACTCAGGCCTCAGGGGCAGCAAAGTCTGGCTCCTCCAGTCTGGAGATTCCAGGAGAGGAAGAAGAAGGAGGAAGAAACAGAACCACGAGGAGGTGGGCTGGGCCAAGCTGGAGGCAGCAAGTAAGACACATTCCCCGCCAGGGCCTCTTTCTGCTTCCCAGCTATCTCTGCCAGCGGGAACCTGCTCCCACCAAGTATACACGGTTGTCCACAGCAGCGTCTGCAGCAGAGAAGGGACCAACCCAGTGTCTGCAGGCAGGGGACTGGCTGGCTACAGTGGTTATGGTAGTGATACCCACGCTGTATTCTGTGTAGGTCGTCCTAAAGCAAGGGAAAGCAAACTGCTCTCACATGAAATCTCCAAGTTGTATCAAATAAATAGCTGAGGCTAGGGAGGCGTGCATGGCATACCGTTCATCAAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-Ankrd33:NM_144790:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.429
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(45.3=70.8)

							
A:
NA

							
C2:
PF138571=Ank_5=PD(31.0=17.1)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000126811





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000049788, ENSMUSP00000067028
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr12:51889483-51890583 
ALTERNATIVE
HsaINT0008883
(ANKRD33)
Human
(hg19)
chr12:52283297-52284367 
ALTERNATIVE
HsaINT0008883
(ANKRD33)
Rat
(rn6)
chr7:142757408-142758654 
RnoINT0017830
(Ankrd33)
Cow
(bosTau6)
chr5:28130370-28131466 
ALTERNATIVE
BtaINT0018442
(ANKRD33)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:22667782-22668512 
ALTERNATIVE
GgaINT0004394
(ANKRD33)
Zebrafish
(danRer10)
chr23:27937001-27941756 
LOW PSI
DreINT0030195
(ankrd33aa)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTCAACTACTTTGCTGGCCT

				
R: 
CTTTCTAGGAGGGATGGGGCA

				
Band lengths: 
342-2316

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"