GgaINT0004394 @ galGal3
Intron Retention
Gene
ENSGALG00000018934 | ANKRD33
Description
NA
Coordinates
chrUn_random:22667640-22669282:+
Coord C1 exon
chrUn_random:22667640-22667781
Coord A exon
chrUn_random:22667782-22668512
Coord C2 exon
chrUn_random:22668513-22669282
Length
731 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TCACATCCTACTGCCCCCAGGAG
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGGCACATCACCATCGTTAATTACCTCCTGAATTACTTCCCGGCGCTGGACGTGGAGCGGCGCGACGCCCGCGGGCTGACGGCGCTGATGAAGGCGGCGGTGCAGGGCCGGCACGACTGCGTGACCGCACTGCTGCTGGCGG
Seq A exon
GTGAGCGCCACGGGGACCAACTCAGAGGTGTGGGTGTCCCATCCCCGGGGGGCTCAGGGCTGTGGGTGGGGCCCTGGGCAGACTGATGTGGTTTAAGGACACCCAAAGCCAACCCGTTCTGTGGTTCCGTGGTCCTGAGGGCCATTCCAACCCAACCCATTCTATGATTCCATGGTTCTGTGTTCTTTAAGGACCTTTCCAACCCAACCGTCCCATGGTTTTTATGATCTTTAAGGACCTTTCCAACCCAACCATCCCATGGTTTTATGATCTTTAAGGACCTTTCCAACCCAACCGTCCCATGGTTCTGTCGTCTTTGAGGACCTTTCTCACCCAAACACAACCACTCCATGGTTCTGTGGTCTTCAAGGTCCCTTCCAACCATCCCGTGGTTCTGGGATCTTTAAGGACCTTTCCAACCCAACCATCCCATGGTTCTTTGATCTTGAAGGACCTTTGCAAGCCAGCTGACCCGTGGTTTGATGATCTTTAGGAATACTTCCAACCCAACCCATTCCAAATTTCCATGATCTTTAAGGATCTTTCCAACCCAACCATCCCATGGTTCTGGGATCTTTAAGGACCTTTCCAACCCAACCCATTCCATATTTCCATGATCTTTAAGGACCCTTCCAACCCAACCATCCCATGAGCTCTGTGGTGGTTTGAAGGATGGGTGGGATCCTCGTGCTGATGCTGCAGTGACACTTCTCACATCCTACTGCCCCCAG
Seq C2 exon
GAGCCGACCTGCATGCTGTGGACCCCATCAAAGGGAAGACAGCCAGGGATTGGGCCGCCTTCACCGGCCGCTTTGAGACCACCGTCCGCATCCGGACCCTCCTCCGGCGCCCGCGGGCCGAGCAGTTTGGTACCCACTACCTCCCCGAGTGGCCGGCGCTGGCCGGGCTGGTGGCCAAAGCCCTGAGCCCCAAATCCCGCAGCCAACGGCTGTTGGAGAAGATCCGTTCCCTCTTCACCTTCCGCATCCCCCGCGACCCGGAGGAGGACGGCGTGTTGGACCACATGGTGAGGATGACCACCTCCCTCGCCAGCCCCTTCGTGACCACCGCTTGCCGAACCGTCTGCCCCGATAGCCCACCCGAAGTGGGCAAACGGCGGCTCTCGGTGGCGGAGATCCTCCAGGAGCACGTGCCGGAACCGGGCACTGGGATGGCATCGTGCAATGGCCAACTGGAGGGGCACGGCCAACTGGAGGGGCACGGCCAACAAGTCGGCAATGGCCAAGTTGCGTTGGACCAAGCGGTGGTGCAGATGGCGCCGTGCCGTCACCGCCTCCTGGGTTTCCTCCCCCGGCTGCTCCGTGCCAACTGCATCTTCCCCGGGGAGCGCGTGCCCAGGATCAAGCTGAGCAAAGCCGGCTCACCGCCGGCGTGCAGGAGGGAGAGGAGACCTCGCGGCCGCGACAAGGCGCTGTTACAGCCACCCAAATGGAGGTACAAGGAGCTGAAGGAGGAGAAGCGAGCGGCCGAGGAGGCGGAGGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018934:ENSGALT00000035985:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(56.0=97.9)
A:
NA
C2:
PF127962=Ank_2=PD(42.9=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGAATTACTTCCCGGCG
R:
GGATCTTCTCCAACAGCCGTT
Band lengths:
343-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]