DreINT0030201 @ danRer10
Intron Retention
Gene
ENSDARG00000058357 | ankrd33ba
Description
ankyrin repeat domain 33ba [Source:ZFIN;Acc:ZDB-GENE-040724-39]
Coordinates
chr24:21911506-21914627:+
Coord C1 exon
chr24:21911506-21911646
Coord A exon
chr24:21911647-21913324
Coord C2 exon
chr24:21913325-21914627
Length
1678 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
CCATTTACTTTCTTTATCAGGGG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTCACATCACAATCTGTAACTACCTACTCAACTATTTTCCTGGGCTTGACATCGAGAAGAGGAACTGCCATGGTTTCAGCGCTCTGATGAAAGCTGCTATGCAGGGTCGAGTGGAGTGTGTCAAAGCACTGATGATGGCAG
Seq A exon
GTACTCCAGACTCTGATCACCACTGCTCAACACTGCTGGGAAACAATAGAAACAGCTGTTATTCCTTTAAGTGGAAGATATGGGTATAAAACAATGATTGTCATATCGTAGATTTACTGTTTTAATGTTTCGTAATTCTTTGTTGATTAATAGTTTTAATAATTATCTCTAACAACTGATTTATTTTAGCTTTGTCAGGATGACAGTACATAATACTTTACTAGAAATTTGTTAAGAAACTAGTAATCAGCTTAAAGTGCAAATTGAAATATGCAAATTGTTTATAATATTAACCTTAAAATTGTTAAAAAAAAAACAAGTAAGACTTTCTCCAGAAGAAAAAATATTATAGGAAATACTGTAAATATTTCCGGGCTCCATTAAATATCACTTGAGAAACATTTGAAAAATAATAAATATTTTGTGAGGGCTAATAATTTTGCCCTCAACAGTAAATATTTATGTATATTTGCAATAGTTTTTTCCTTTATTTATTGTTTCTTTTATTCGATTTTTTTTAGCAATCTGTGAGTACTGCTTTTAGTGCAATGAACTAATAAACTTTATATAGTGAGAGCTGTTTAATTTATACTGCTAATAATAATAATTATAATAATTTATTTTCTGGTATTATTGTTGTTATAATAATAATAATAATAATTATTATTATTATTTTTTATTAATATTATGCGAATAACAACTTGCAGCAATGCAATAATTTACTTCTATATTTAGTCAGTTTTTTTTGTTTTCATTGTAAACTCGCTAAATGGAAAGGGGTGCATAGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGGTAGATAGACAGAAGGAATGATAGATAGAAGGAATGATAGAATGACAGACAGACAGAAGGAATGATAGACAGACGGACAGACAGACAGACAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGACAGACAGACAGACAGACGAATAGATAGAATGATGGATGGATGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGACAGACAGACAGACAGACAGACAGATGGACGAATAGATAGAATGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACGGACGGACGGACGGACGAATAGATAGAATGATGGATGGATGGATGATTAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACGAATAGATAGAATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTCTTGTCTCACTATTTGCCATTTACTTTCTTTATCAG
Seq C2 exon
GGGCTGATTTGGAAGCAAGGGACAACGGGCGGAAGTTCACAGCTCGAGAGTGGGCCATCTTCACCAGCCGACACGAGACCGTCTTAACCATTATGCGGCTCATGCATCAGCCATGTGCAGATCAGTTCTGTGACAGCTATCGACCCGAATGGCCCCTTCTACCCGCACTGGTGGCCAAAGCACAGGCTCCCAAAGGCTGCATCCAAAAAATCTCAGAGACACTACGCGACTTCTTTGACATCAGCAACGTCACGGAGGCTTCAGAGGACGGTGTTCTCGATCACATGGTACGCATGACCACAGCGCTAGGCAGTCCATTCATTGCGACGTCATGTCGAACGGTGTGTCCTGGCAGCCCACCATGTGTGGGCAAACGTCGTTATGCTGTTCAGGAGATATTAAAAAAGCGACGCATTGAGCAGCTTAAAATACTCGGACCTGAACGCATCGAGAACTATAAACGTCTTTTTCAGAACTCCCGCGTCCTGCTGGTGCCCAAACCGAAAGATCGGCGAGCGAGTTTACAGCCTAATGCTCAAGCAGAGGATTCATCCACACTGACCATCCGCAGGACCAGTCTACTGCCATTACACCTGCTGAGGAGGAGCAGCGTCAGACCAGGTCTGGTGGTGCCCAAAGTGAGGATCACCAAGGCTCCGACTCCAACCTATGTGCCGGAGAGAGTGCGGCGGAAAAGCAGCTGTGTAGAAGAACAGTTCCTTCAGATCCCCAAGTGGAGATACAAAGAACTGAAAGAAGAGCGAAAGAAAGCAGAAGAGGCGGAAAGGAAAAGACTGGAGGCCATAACGAAAAGACAGCTCACCACTGGCAAGAGGAAATAAGTGTTTGCAAATATACTACTCACCATTTGATACTTGAAATGCTTATGTTAGATTGCGATTTATTTTTATTACCTATTTATTATATTTTTGATAGTTAAAGGCTTCTAAGCTCCTTTTTAAAATGGGGTTAATTGAATGGTTTAAAGGGAGCTGCTCTTTTAAGGGCCCTGACACACCAGAAAACTAGCGACGTCACTTGTTTTCAGTTGCAAACTGGGTGAAACTTTACACTAAAAAGAGGAGTCATTTGGCTCCACTTCCTTCCATTGTAGAAAAGTGAAACCAAAATAGTTGTTTTGCATGTTGATCACACCAATGATGTCATTTGGAGCCTGAATCTTTGATGTAATGAACATAAAGTGGAGCAGTGGTCATAGCCCAGCCCAAGCCAAATCGCAATCGCATGAAATAAGTAACTATAAAAATAGACATTAAAAAACAATGGACTATACATTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058357:ENSDART00000132390:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(49.0=100)
A:
NA
C2:
PF127962=Ank_2=PD(68.3=14.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGCTCTGATGAAAGCTG
R:
TGTGATCGAGAACACCGTCCT
Band lengths:
351-2029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]