GgaINT1006231 @ galGal4
Intron Retention
Gene
ENSGALG00000027521 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:HGNC:35240]
Coordinates
chr2:78170628-78180204:-
Coord C1 exon
chr2:78180064-78180204
Coord A exon
chr2:78174818-78180063
Coord C2 exon
chr2:78170628-78174817
Length
5246 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TGTTTTTCTTTTCTTTTGAGGGG
3' ss Score
0.77
Exon sequences
Seq C1 exon
GGCACATAACCATTACAAACTATTTGTTGAACTATTTCCCTGGGCTTGACATTGAGAAGAGGAATGTGTTTGGATTTACAGCACTGATGAAATCTGCGATGCAGGGACGAACGGAATGCGTGAAAGCCTTGATGATGGCAG
Seq A exon
GTATGCAAAGTGCTTTGCTGTTTCTTCTTCATCATCTAACTGCAAATAGTAGACCATCACATATAGACAGCAGCAAGGGATGGTGATAGACATTGCTCTACAGGTGCAAGGCTGACTCTTGACAGAGCCATGTAGCACCTTTTAGCCATAGTGTTGTATGCTTTACTGTGTTGAGTAATTGATACATAAGTTATTAGCTAACAATTAAATAATTAGTATATATGTATGTTGCCTTATTTTATTTTTTTACTGTTGCAGGCATTGGACACAAATAAGTTTTATGGAAATGATAATAGATAGCATGTGAATATCATTGTTGTTTAGACCCCAAATCCCACAAGTCCATTTAATTGTAGGCTGAGATGTTGAATGGTTAGTTCATTTCTGCTGTTTTGCTGCCACAGAAGTCTAATCTTTCATAATTTCATAAAATTGTAGATTCGTAGAATGGCTTGGGTTGGAAGGGACCACAAGGTTCATCAAGGTCCAGCCCCCCCCTGTCGCAGGCAGGGCCGCCAACCTCCACATGTAATACTAGACCAGGCTGCCCAGGGCCCCATCCAACATGGCCTTGAACACCTCCAGGGACGGGGCATCCACAACCTCTCTGGGCAGCCTGTGCCAGCACCTCACCACTCTCACAGTAAACTTAAATTTGAACTTAAATTTGACCGTTTTAAGTAGAAGGCATTTATCAAACATAGTGACATTACTTTCATCCATTTTTATAATATCCAGTTTCTTGATGTTGATGTGACACAGAAATGCTTGAATGATATGGCAACTGGCATTATTTTCTGCAAGGTTCTCCAGCCTGTTACACTGGAATCAAGGTTTTGGAGTCAGATCATTCATTCTAGAGTTAAATTTTTATGAAACAAAGTTATAAAGCGACGGTTAGAGCTGGTGTATTGCTAGACACAGGTGCACTTTCTGAACTAATGTCTATTTCGTGCAGATGCTAGTTCAGAATTTTCCAGTGGCTGTTATAAATTATCGCTTAAAATGAAACTTCAATCCCCATACCTTAAAACTTGTCAAACTGACCTGACAGTGTCATGGCTTTCTATTATTATCACCGGGGATCTGATGGATATTTGTTCTGCCTGTTTTGGCCATGACAAGCTATTTCACAACTTTCCATCATGGCAGGTAACTCAGCATAGATATCAAGTTTAACATACAGCTGCTGCCTCTGGCATCTGAATAGCCACCTACTTTTCTTCATGTTCTGTAAGGAAACAGATCAGTGGGAAGAACGAGCCTTTCACCAACCAGAAAATGACTTTGTTATCCTCCTATCATGTTTACCTACAGAAAGTTATGTTGGGCTGGTTGTGCATTAGAGATAGTGAGGGTAGCAGAGAACATCTGTTGGCTAAAGGGATCTAAGATTAATCATAGAATATCCCAAGTCGTAAGGTACCCATAAGAACCATTGAGTTCAAATATGCTACAGGTTTCTAAACTGCAGTTTATTTACATGTTTTAGAGATCACTTTGCAGGTCTGCACATTTTCAGCTGAAAAATAGGGACCATTTCAATATCTAGTTTAGCACTGTACAGCCTGGTGAAATGGAGGGAGGGAGTAGCTTGTTCAGAATGGATTTAGAAATAGTTTGGGGCTGAAGGGATACTAAGTGGCTGCTGACTATAAAGTGCTGCTTTGCTGAAGAATGCATAAAACATTGTTATTGAATGATCTGGGGGAAAAAGCAGTTTCATAAATAAAACAATTCCTTAGGTTCCAGCTAAATTCTACGTTAACCAGTAAGAATACATGGAAATATAGGTGGAAAATACCCATAATCAGGCATGGGTCTTTTTGCATAACCTCTGACTGTTGTACAGCAACAAAACAGACGTGTGTTGATAAAGGAGTTACAGCCAGGCAGTCTTTAAACCCAGTACCTGCTTAGTGGCTTGGATGAGATCTGTTTTTGGGCAATTTCTTATGGTAATGCAGAAGATCAGTAAAGGGAAGCTCACTTTTCTAGCTGCCTAAGTGGGATTTGGCTGCTGGATAGGAAAGGGGCATCAGCAGAGCGTGATAGATGGTTGGAGCTGGATTTTTTAAGTGGATGCTCTTCCTGAAACTTGAGTTCCTGGAGAGTGGCCAAGGTTAATGACTGCAAGACGAAGGTGCTCTGAGACACTTGTCTGTAATGTTTCCTCTTTCAAAATGATTCTTTGGAAGGTGGGGGTTTGTGATTTGGGAATGCAAAGTGAAAAAGAGAGGAGCTGAGCCACTCATGGGCAGTTTGTCACGGGTGGCTGCGCAGTGAGGACCAAATGGTGCCAGCAGCCAGTGAGCCTGGGCAGGAACACAGAAACGCATCATTACTCACCACTCAAGCCCTGCTGAAATCTCCAGTGTAAACCCAGTGCTGTTTCAGTAAAGTCACTGAGGTAGCAGTGGTCATAAAGACTGGGTTTTAAATACTGTGTGTAAAACAGCTGGGTAATAGATGCCTGCTACACTGAGCTCTCTTGTTAAACTCAGAGTGCCCCAGTGCCAATGTGTTGGCCATGCACCTTCTGCCTTCACCTGCTCCTTCTGTTGCCCTCAGCCACCTTCATCAGCTCCCTCCTGGGGAATCTCTCCTGTGATTTTGCTTTCTTCTTTTTGATCTGATACTTATTCCTAAACTAATTCCCGTGTTGGGAGTTTATGGATCTGAGCAATATTTCTGAGCTAAGAGCTCCCAGACCCAAAGTTCTGCCTCTTGCGGATCTTCTGCAGCAACACGCGTGATCCTCCATGATTCTGTGCTGACAAGGCCATGCCCCATTCTCCCCGTCAGATGGACTCAAACTCAGATGAGCATTGTCTGAAGGGAATCACAGAGCTGATCTTTGTGAATTTCTCTCTCAAGGCCCTTCAGCAAGGCAAGGCCAAGCAAAAAGGGGCATGGTTGCCTGTCAGGAAGCCCTCTAGGATTTGTTGGACAGTCTGAGGTTCCACCTCAGAGATGAAGTGTGGCCAGCAGATTAAGGGAGGTGATACTTCCCCTCTACTCTGGCCTGGTGAGGCCACATTTAGACTATTGTGTCCAGTACTGGGCTCCCATGTTCAAAAAAGACAGATCTCCTAGAAGGAGTCCAGTGAAGGGCCATAAAGATAATTAAGGACCTGGAGCATCTCCTATATGAGGAAAGGCTGACGGACCTGGGTCTGTTCAGCCTAGGGAAAAGAAGACTGAGAGGGGATCTGATCAATGTTTATAAGTATGTAAAGGGAGGTGGGAGGCAAATGGATGAGGCTCTTCTGGTGTGGAGTGACAGGACAAGGAGTAATGGCCTAAAACTTGAGCATAGGAAGTTCCATATAAAGATGTGAAAGAACTTGTTTACACTAAGAGTGGCAGAGCACTGGAATAGGTTGCCCAGAGAGATTGTGGGGTCCTCCTGTGGAGATATTCAAGACCCACCTGGACCTGTGTGACCTGCTTTAGCAGGGTGGTTGGACCTGATGATCTCTTGAGGTCCCTTCCAACCCTTGGGATTCTGTCATTCAGTAGTTCTGTGTCTAGTTAATATTTAAAAAAGGACATGACTATTCATGTCTCATACAGGTGTGACATCCTGTTAAGTGACAGTTCTTTTTAGAAATGCCTCTGGATTTGTACAGAAGATCAATACCGCGATAGTAAATCATGCCTTACAAGAGATTTTGTGTTACAAGTTACAAAGTCAACATCGATTTCCACTGAAAGATCAGGATTCCTACACTACATAGTACTCTTTCTTGAGATAAAGTTTCCAAAATACCTGGGTACACGTCTGTCAGGAGCAGTGAGGGATGGCTTCACCTCAAAGGTGAGTGACCCAAGGGCTGCCGCAAGGCACACAGAGGCACTGGCCTCATCAGCAAAGGCACTTCTTGAAGAAGTGGAGCAGGTCAGGTGATGATAAGCACAGTCAGCCAGTGACTGCCAGCTAAGTCCATGGTGATGAGGCAAGACCACAGAGACGGGAGGTCTGAGGTGAAACCAATGAGTGAGGCCTGCAAGGCACATGGCCAGGCACAGCTGCAGCACAGCTCAGGCAACTGCAAGAGCTGAGTGTCTGAGTTTGAATGCAGCCTCCAAGCAAAGGTAAATTTAGACACAATTCCCTTAGCTTCTACTCTTCCCTTAGTAAATCTTTGCCTGTTATGTGAAAAGCAAACAAACAACTTCCACATAGTCTGCCATGTTTCCAGTTAGTTTTAGTAGGAAGGAGTACAGACACAGACAAGTATTCAGAAGGGGACAAGACAACAGTTTAGAACAAGAGAGTCGGGGGTAGGGAGTCTGGGCAGGAGGATTTCAGAAACAGGCTAGTGTAACAGGAAGAAATATCTTTCTGTGCCTTTCTTCCAACCTCCTCTCACTGGTCTGTCTGTAGCTTCTGTTGTCATGAACAGCTTCAACCTCTTTGCCTTTGAGCTCTCACAAGCCTTTCTTCAGCCCACAGCTAATGAACTCTTTGTTTTGATCAAATCTTCCTCTTCTTTGCCTCCTTCCAGCTTGGGCTCCGTGCTTGACGCTTCAGAGTGCTTCTGTGCTTTCTCTCTGGATATTTCTGCAAACTTCACTTAGACTCCTCTTCAAATTGAGACGGACTTCTTTGCTTTGGATTTCTCGTTCCATTCACATTCACTCCTTTTCTGTGTCTCCATCTTTCTCTTTTAGAGATTTTCTTAGGGAATTTGGAATAAAATGATACTTAGTAGGGTTAAAACTGAACTCCTGATCACTTTCCCTGTACTCTCCTTTTTCCTGCTTTCTGTAACAGTTAAACACCCTTTGAGTGGAAGGTTAAACTGAAGCCATTACAAACCAGTTTCTGGTTGCCTTTCCTGATATCTAGTCCCTCTCATGTTGGTTTGAAATGGTGTCACTGAGATAAATCTAAGTGGGAAAAAATAATTCATCACGATTCTTCTCTGGCCTTTTCCCCAGATCTCAGTCTCTGTGCATGCCCATCTTCCAAAGCAATGTGACAGAACGCCTTTTCTTTTTTGACAAGATATCTATAGGTCAGTTATGTGTTGGCTGTTTGAAAGTGGCACTTCATCTGATAGAGAAGCTCGTCAAGAAGTCAAAAGTTGTAGCCTGTTCACATTTCAGCTTCAAACTTTTTCAAGGAACTAAGAAATTATCTACAGGAGCAATGATATACGTACATCAAAAGCGAATATTAAAGTGCTCAGAAATGCAGACGGTTTCACTAACACTGTTTGTTTTTCTTTTCTTTTGAG
Seq C2 exon
GGGCAAATGTTCACACAACAGACCCAAGCCGTGGACTGACTTCATGGGAATGGGCTTGTTATACAGGAAGGTCAGACTCTGCTTTCATCATGCAAAGGCTGATGGATAGACCATGCCCAGAGCAGTTTTGTGATCAATATAAACCGGAATGGCCAAAGATGAAGGAACTCCTTGCCAAGGCTGCAGAACCAAAAACCTGTTTGCAGAGGATTTCTGAGTGTGTGAGGTCAGTTGTCTCGTTCCGGGCTTTCCATGGCCCAGAAGAGGATGGGGTCCTTGATCACATGGTGAAGATGACGACAAGCTTAGGCAGTCCCTTCATTGCTCTGTCATGTAGGACTGTGTGTCCAGGAAGCCCGCCTTCTGTGGGAAAACGCAGACTGGCTGTGCAAGAAATCCTTAGGAAGCAGAGAGCTGAGGAGATCCGATCTCAGGACAAAGACCACGTTAGCAGCTATGAGAAATTATTTCAGAACTCCAAAATCACAGTAATCCCCAAAAAGAAGGACCGTCGAGCCAGTCTGCAGCCCGTCAGCCTCGCAGTGTCTCAAGTGAGCACCATAGCCACCAGGAAAACAAGCCTCTTGCCGCTCCACCTGCTCAGAAGAAGCAGCGTGAGGCCGGGATTTGTCATCCCCAAAGTCCGTGTCAGCAAGGCTCCTCCACCCACCTTCCAACCGGAAAAGGCAAGAAGGAGGAGCAGCGCTAAAGATGACCCCTACTTGCAGATTCCTAAGTGGAGATACAAGGAGCTAAAAGAGGAGCGTAAGAAGGCGGAGGAACAGGAGAAGAAAAGAGTAGCAGAGGCTCAAAGACAGAGGCAGGTGTCTCCTGCAAGAAGCAGAACCTGACTGACTGGCAGTTACTTGGAAGGTTTTAGAGCCATTAGTCTTGTTATCTGAGCAAGATAACAGACTGCATGCCATCATGCATGCCTGCTGTTGATGGAGCTGGAACACTGTATAGCGGCCTTTATGGTGCAGAAACATGGCAAGGGCTATACCACAGTGTGTCTGATTATGGAAGGTGAAGTTATTTTTGGGTGGAAGACAAAAATGTTTACCCGTCTGCTGTTGATAGGAAGTTCAAGTGTTTTTTTTTTTTATTTCCAGTTCCAGGTGAATGACTGCAAAACTGCCTGAAAAGCAACATGTGTGAAAGGATCATATTTTGTGTTTGTTCATTTTGTAATGGGTACAGTTAAGGAGTTGTACTTTTGACACTAGATATTCTTTCCTCTCCTTGCATTGGTAGGCATATTACAAGGTTTTATCGAAATAATGAAACATTTAAAATACATCACAGTCTCAGTGGGCAGTGAAAATCTAAGTCTACTCTTTTTTTAATGTATGAAGCACTTTACGGTATATTAATTCTAGTAATCAAAGATTAGTGCAAGGTAGATATTGATCTGTACAGCTCTATATGGTCCGTGTGGATACATTTCTTAATGTTTTTGTTCTGTTGAATATAAAGAGGGCTGCATATGAAATATTTCTGTAGCTGAGGTACTCACATCATCTGCAGATATAAATCAGGGACAATGACTGGTTTCTTTGGAGCAACAGAGAAGTTGAACTAACTTTTGTATGACAGTCACCTCTAACATTTGCCTCCCCAATTATGTTTCCCTGTATCCACTACCTGTTATCTCCTCTTTAGTCTCAGGGATTTTTTTGTCTTGGCATTTAACTGTGAAGTAAGGGAGATGGCGAACCTCAGGTGGGTTTAGATTTGTCTTTTTCCCTTGATATTTAAATTACTGTTAATAAATAAATAAATAAGTAAATAAGCACCAGTTTATTATCAGTGTCTGCACTGCAACTTTTCCAGGTTATAACCAAGACAGATTAACTATGCACATTACAGAAACAGAAGCAATTTTCCCAGGTATCAGGTCCAGCCACAAGCTATGACAATCTGGTCAGAGATTCAGTATCAGCCATTGATGTTTGGAAACTGGCTGGATTAATTGTGAGATTTGATATCATGCATCTGGGTACCTGGAGAGTGTAGGACTTCACTCTGTCTCAAAAGCAGAAGAAGATATTCCTTAGTACTGAAGTTAAATCAAGAATGGGCCGTGCTGCTCTACAGTTGAAGATTGACATGTCAGATGTCCCGTCTATGACCCTAAAACCCACTGGATATATGGGGACCATACCATCCTCACTATATGAAGACTTTCAGAGCCATTGTCCTATCCCAAAATTAGATCTAAACTGTTTGGTTGGCCAGAGAAACACAGTGGGCTTACAGAAACACCGCATCCCTTGGTGCGCATGAGCACTTCTGTAAGCGCTTTTTTCTATAGGTTGGTGCTGGTTCTCATGGTCCAGAATACAGCTGTATGTGCTTTTACCAGAAGTTGGCCTGAATGACATGCCAGAGCCTGGCAAACTGTGATAAGGAATGGCTCTATACTTGCCGCTTGCTGAAGAGCACAGTCATAATGGTGGAGGGCAAAACATCTCAGAGGCTGACCAGAGGCTCACTGAACTTGTAATAAAACCATACGCATCATGGGAAAAATAAATTCAGTTGACTATAAACTCGCATTCAGGTCGGTATTGCTAGCCAGCAGGTTTGGGGGCAGATATCGACAGAGGTTACATATGACTGGTGCAACAAGGATGTTAGGCAGAGCCCAGTCTTTGTATGCCTTGCTGGAAGAGCTGTGCTGGCTGGACTGCAATGTCAGATTGCCTCTCTTGTCCTGACGTGATGCAATAAGCACCCTGATGATAAACCTCCCCAGTCCTATGAATATAAAGATGGTTTTGGTCTGCACGACACATTTGTCCTGTGCAATTCATAGGCACTGCTTTTGTAACGGGTTTGCTGTGACCAGAATGTAAGGCTGATCTTGTTTCTCCAGAGAGTAGGAAAACACCCTTTTAGCCACCTGTGGCAGAGATGGCAGGATGGATCTGGATGTGGTGCACTGTACTGAATGGCTTTACTATTAATTTCTGCTTAGTGCCAGCTGAGTGTACTGGAGATTTAGCTTTTGGAGTGTGTGTGGAAAAGCAACGTGTGCTGCAGGTAAAATTGCACTCAGTAGCACTTGCAGGAGGCACAGAGCTGCCAGGTGCTCTCAGGGATGAAGGTGCGGTGTGTTAGTGATGGGGGCTGAAGTTAAATCCTGCTTTCTAACCCTTTGAACTTCCTCGTGCAAATGTGAATGAGTGTGTGATGTTTCCATTAAAAGAAGCACAAGCTGTGGAACTTATTGGTGACTTTATTCCTCAGATAGACTCGGGGTGCTGCCTCCCATTTCTCAGTGCAGGGGAGCGGTGAGGGGAAGGAGCGCTGCTGCCTGGTGGTGGAAGAGGAGGCGGCCCTGGTACAGGCTAGGCAGCTCCAGATGGTGTTCCACTGGGTGAAACCCAGAAGTGATACCCTCTGAGAGGTATTTGTGTCCCTTCAGAGCCCACAAAGGGAAGCATGGGCTGTCTGTTGGATGGTGAGGGGTCAGGGCCCATCTCCCCAGCCCATGTCCCAGACGGCTGCTGTGGGCCCAACAAGCGCCAGCAGCCGCAGAGCTGCTAGGGAAGGCCAGCAGGGCAAACTGATTTGTGAGAAATGGGAATTACATTTTTCTTCCTTTTAAATCATCACCTGCATAATTACAAACCAACGCAGCCGTTTGGGTCATTTATAGAGGCTCTTCATTACTTAATTAATTGCTCACCAAGAGAGCATATTCAGCAGAGATATGGCTGATGAGCAGCCAGCAGTCTTCTCGAGGCAAGCAGGACTGGACTGACAGTTCTGCACTGCCTCTCAGTACAGTAAATCACGCAATTAAACCTTTGAATTCCCAGCCACTAATGAAAAGTGCTAAGCTGACGTTATTGGAGATAACAATGAGTGGAGATCGTCTCTGGGCAGTGAAGAGAGTGGATGTGGGCTAAGGGAGGCAATGGGGGGAAGAAAACATGTTGATGTCCACGTTGTGCCTCTGATGTAAAATAAGATTGGCTTTTGACCCAACTTCTTCTGACTGTTGTGCAGACAAGGCTTAGAAGCAGTCATAAAGGCTTTCTCTGGTCCAGCAAGGAGTATATTATTTAAGAAGAAATTGATTTGATGTGAGCCTCCTTCCGTGCCTCCTCAGTTTCTCAGAAGTGGCTTTCCTGGTCATTTGGAGTCATTGTTTTCAACACCTTCCTGAGGTAATTAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027521:ENSGALT00000044518:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(49.0=100)
A:
NA
C2:
PF127962=Ank_2=PD(7.3=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]