DreINT0030204 @ danRer10
Intron Retention
Gene
ENSDARG00000015589 | ankrd33bb
Description
ankyrin repeat domain 33Bb [Source:ZFIN;Acc:ZDB-GENE-070912-531]
Coordinates
chr2:30563594-30564683:+
Coord C1 exon
chr2:30563594-30563734
Coord A exon
chr2:30563735-30563866
Coord C2 exon
chr2:30563867-30564683
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTTTGTCTTTCTTTGTGCAGGAG
3' ss Score
10.53
Exon sequences
Seq C1 exon
GCCACAGTATGATTACACACTACTTGCTAAACTATTTTCCTGGGATTGACACTGAGCGTAGGAACTGCCATGGCTTCACGGCGTTGATGAAAGCAGCCATGCAGGGTCGAGCTGAATGTGTGCGGTCTCTCATGATGACAG
Seq A exon
GTACAGCATCATCAGCTGAAAAATGAATACAGATTTCTAATTTAGTTCATGCATACATAATGATCTTCTTTTATGTTCCTTCAAGTGGGCATTCATTTTCCTCCACAAAACCCTTTGTCTTTCTTTGTGCAG
Seq C2 exon
GAGGAGACATTGAAGCAAGAGACTTTGGCCGTAAACTGACACCACAGGAATGGGCCTTGTTTACAGGCCGCTACGAGACTGCCAAACTGATTTCCAGACTGATGGATAAACCGTGTGCCGAACAGTTCTGTGACTCTTATCACATGGGGTGGCCTATGCTGAGCGAAATGGTGGCCAGATCGAAGGAGCCTAAGTCCTGCTGGAGGAAGTTCTCAGAGTGTATCTGTAACATGTTTAACATCAGCATGAAGACCAATCCTGTAGACGAAGGGGTCATGGACTACACTGTGCGAATGACCACAGCGTTGGCCAGTCCTCTTATAGCCACCGCCTGCCACACTGTGTGCCCGGGCAGCCCCCCGTGTGTAGGAAAACGGCGTCCTGCCGTGCAGGATATCCTTCGCAGACAACGGCTGGCTGAACTGAAGAACCTCGGACCCGATCGCCTCAACAACTACAAGAGGCTCTTCCAGAACTCCAGGGTTCTCCTGGTGCCCAAAAAGCAGGAACGCCGTGCCAGCCTGCAGCCGCAGTTACTGCACAGTGTCGCTATGGCTTCTACTGTGGCCTTGAGGAGAAACAGCCTGCTGCCCCTTCACATGATGCGCAGGAGCAGCGTACGTCCTGGGATGGTGGTGCCTAAAGTTATGCTGTGCAAAGCTCCTCCTCCCATACACATGCCAGAGCGGCCGCCACGCAGGAGTTCAAACGATTCAGCACAACTACAGATCCCTAAGTGGAAGTACAAAGCTCTAAAGGAGGAGAAGAAGAAAGCTGAACAGATGGAAAGGTTGAGATTGCCTATTGGGAGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015589:ENSDART00000146518:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(22.4=45.8),PF0002325=Ank=PU(69.7=47.9)
A:
NA
C2:
PF0002325=Ank=PD(27.3=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTGATGAAAGCAGCCATG
R:
TTCGATCTGGCCACCATTTCG
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]