BtaINT0020569 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49462926-49469047:+
Coord C1 exon
chr3:49462926-49463063
Coord A exon
chr3:49463064-49468814
Coord C2 exon
chr3:49468815-49469047
Length
5751 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATATAATTTTATCTCTTTAGCTG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GGAATTTATCGTGTATGTGGGAACAAAATCAAAACTGAAAAACTGTGTCAAGCCTTGGAAAATGGAATGCACTTGGTAGACATTTCAGAATTTAGCTCACATGATATCTGTGATGTCTTAAAATTATACCTTCGACAG
Seq A exon
GTAAAGTTTTTACCATTGAAACTTACCATTAAATAGAGCAAAAATATAATTTGCAATTTGCTGATAATGTTTGCTGCACACATTTTTCATTGATATAAACCATATCAATATTTTTCCAATTATTAAAGTACAGATCAAAGAGTGTATAAAATGTATGTACAGTTTAAAGACCCATAATAATAAAAATCTTCATTTTCCATCACTTAGGTCCTTATAATAGAACATTCTTATACTTTGTTGAAGGCCCCTATATGCCACTCCACAGTTGCAGCCCACAGCTCTACCCAGTGGTGTTTCATAACAGTGTTAATACCTCCCTGTCTTTTCTTAACTGTTTTAGTACCTGTTGTGTATTCCTAAATATTGTTCATATATTTAAGAATAGTGGTTTAGCCACTAAGTTGTGTCCAACTCTTGCAACCCTATGGACTGTAGCCCTCCAGGCTGCTCTGCCCGTGGAATTTCCCAAGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAAGGGGCATCTTCCCAATCCAGGGATCAAACCCAGGTCTCCTGCATTGAAGGCAGATTCTTTACCAACTGAGCCACAAGGGAAGCCTCACAATATACATACAACAGAATGTATCAAGTTCTTGAAAACTGAGTAGAAAGCATAAATCTAGCTGTTTAAGGAAAGTTTACTATTCACACTGTTATATGAAGGATTCAGTAGTGGTTTGGCTTTAGTTTCATTGGTATTTTAGAATAGCTGTTGGGGGAGGTTAGTGATCAAGGTGTGAATGCATTCAGGGAAGATGAAGTTCACTATGGTTGGGGCATCAGTCAGGGCTCTCCTATAAGCTTAGTACTGCAAGTTCAGCAGGAATGTGGTCAGCAGTGAAGTGCTTTATATTTTCTTTTTCTGTGCTCACTCTTGTACTCGCATGTTTTAGGAGTAGGTCTGAAGAAAATGCTGCTGTGGGTGGATTAAGTGGCCATAATGTCTCAGGCAGCAGCTCATGGAAGGGTTGCGGGAACAATCAGCACTTTGTCATGATAAGCCAAGTTTAAAAGATCTGGGCCAGGGCCAGCTGCATTCTGTCCTTGGGTAAAGCTCTGTCCTTGAGTGAAAATGAAGACAATTGCAGAGAGCATAGTAATGTTGGTCCTCTACGTGTCCATCTCAGGAGCTCTGTTCTTCTGGGTCCTTTTAATATGGGAAGAGCTGTCATCCTGGGATCTCTCTTCTCCACTCTCTTCTGTGAGAACACCTGTCTTCTGTGTCATGTCTTCTTGTTTTTTATTCTCCTGTTTTGGTCAGGGCCATCTGGAGCAAAGTGGACTAACTAAACATTTGAAACTGTTTTATCTGTAAATGTCTTTACTTTGCTTCCTTGAATAAGAATGGAAGAGTGGGAGGTAAGGAAGGTTATAATATTCTAGGCTGGAAATTATTTTTCTTTGGAAATTTGAAGGCATTTTTTTTTTATTGTTTTCTTTGAAGCCTAAAATCCTTCTCATTCCTGACTATTTATTTATATGTAGCCTGTTGTTTTCTCTCTGAAAACTTGTAGAATCTTTTGCTATCTACTATCTTCAAATTCCACAGCCTATGCCTTGATGTGGGTGTATTTTCATCCACTCTTTCAGGCACTCCACAGTTTCTGTCATTCTGCTTACTTGTCCTTTAGTTCGTGGAACTTTAATTTCCTTGCTCTATTGCTCCCCTCTGTTTTCTCTGTGTTTTTTTCTGGAACTTACATTTGGATGCAACTTGTATTGGTTCTCTAGCTTCCTTCCCTTTTCCCTATTCTTTCGTTTTTGTTTTCTTTTAATTCTGTCTAAAAAATTCCCTCAGCTTTATCTTCCATTCTTACTGTAAACTATTTCATTTCTGAGATCATGTTTTAATTTCCAAGAATTCTAGTTTTCTGTCCCTTTTATAACATTCTTTTTATTTTATTGAATGCTGTATTTCTTCTACCTGAAATATTCATATTTTTTAAAGAATTTTTTCTTGTCTCAGCTTCTAGCCCTGTCCTATAGAAATATAATGTGAGCTTTGTATATAATATTTAATTTCCTAGTAGCCACATAAAAAGAAACAGTGAAGTAAAATTTTAATATTTCATTTAACAAATGGAAAGCATCTGAGCATCTAATCAGTAATTTTAAATAATTAATGAAATATTTACCTTTTCTGGGGTTTACTGGGTCTTTGAAATCTGGTGTGTATTTTTCACTTAGAGCACATGTCAGTTTGGAACAGCCACATGTCCACTGCTCAGTAGCCATATATGACTAGCAGCCACAATATTGACAGCAGAGTTGTAGGCCTTCGAGTTGGTTTTTTCCTATTTTCATTTCTGTCTTCTATAGTTTTCTCCTTAAAATGAAAGCTTTGGGAACTGAAATCTCTCTGGAAGCTTTTTTAATTGTAAACTATTTTTAAGATTTTATTGAACTATCATTGATCTACAGTGTTGTATTAATTTCTGCAAAGTGATTCCTTTTTTACATATATATATATATATATATATATATATATTCTTTTAATATTTTTTTCCATTATGGTTTATCCCAGAATATTGGATATGGTTCCCTGTGCTACTGTCTGGAAACTCTTGAATACATGAAGACTTGAAGATTTTGAACTTTACTGTAGTGAGTGTAGCGTTATCTAAGAGGACTGTTTGGGAAACACCTGACATTGGTATGTCTAGGTCTCTGCTTGTGGGCTAATCTAATAGCACAGAGAAGAGTCTTTCCCTGCCTACAGGTATGATTCCATAACTCTGGGATCCTAGTTAGGTAAGAAGGGTTCAGCAGGCATACAGTCACTAAATCCTTATTTAAGATAGTTACCCACCTGTTCCTTATGCTTGGCATTACCCTTCCAGAGACCCTCTGTTTTACACTGCCCAGAGAAGAAATTTCCAGACTTCTGAGGTTGCTCAGGAGCATGGACTAGGGATAAAGATCTAGAATTCTAATGCTTTTTGGATAGCTCACACTTCCCCCAAATTAGAGGACCTAGTCTAACAATCCCTGCATCTCCTTCAGTTCAGCTCAGTCATCTCTGACTCTTTGCCACCCCAATGACTGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGAAGTTTACTCAAAATCATGTCCACAGGGTCGGTGATGCCATCCAACCGTCTCATCCTCTGTCATCCCCTTCTTCTCCCGTCTTCAATCTTTCCCAGCATCAGGGTCTTTTCACATGAGTCAGCTCTTCACATCAGGTGGCCAAAGTATTGGAGTGTCAACTTCAGCATCAGTCCTTCCAAGGAATAGTCAGGACTGATTTCTTTTAGGATGTACTGGTTGAATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCATTCAGCTTTCTTTATAGTCCAACTTTCACATCCATACATGACTACTGGAAAAACCAAAGCTTCAACTAGACGGACCTTTGTTGGCAAAGTAATGTCCCTGCTTTTTAATACACTGTCTAGGTTGGTCATAGCTTTTCTTCGAAGGAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAGTCTGACAATGTTTCCACTGTTTTCCCAACTATTTGCAATGAAGTGATGAGATCAGATGCCATGATCTTAGTTTTCTGAATTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAGGGGCTCTTTAGTTCTTCGCTTTCTGCCATAAGGGTGGTGTCATCTGCACATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCATCTTATGCTTCATCCAGCCCAGCGTTTCTCATGATGTACTCTGTATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATATTCCTTTCCTGATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGATTTCTCAAGAGGCAGAGTCTCCTTAGGATCCGGTAAATCATGTTGATTCTCCGTTTAGAATTTTAGCTTTCTTAGGAGTGCTAAGTCAGCACATGTTTATGTCCTCTTCAGCTTGCGAAATGTTTTTTGTCTCCATCCCTGTTCTCCCAGTCCTGTGGGCTTAACTGTATGTCAGTGGGATTGTAGAAAGGAAAGAAATTAGGTACAAATGTTGAATGTACCATGTTAGCCCAGGAAACTATTGATATATCTTTAACCACATTTTATATGATTCTCAACTGAGAAATGGAGACAGTATTTTCAAATAACTTAATCTCACAATGAATCATCCTTTATTTCTTCTAGTCAGTCAGGGAGAGGAAATAAATGGGGTCAAATACTACCAGCTTTTGGTCTTCCTGGGTGGCTCAGTGGTAAAGAATCCATTTGCCAGTGCAGAAGATGCCAGAGATAAGGATTCAATCCCTGAGTCAAAAAGATCCCCTAGAGAAGGAAATGGCAACCCACTGCAATATTCTTGCCTGGGAAACCCCATGAACAGAAGAGACTGGCAGGCTACAGTCCATGGGGGTTGTAAAGAGCTGGACGTGACTTGGCAGCTAAACAGCAACAACATACCAGCTCTAGTTCTGTGCTAGGAATACTATGGGACCAAAGCTTTAGTATGGAAAGCCATGGTCAGTTCTTACAGTATTAAGAGAATAGCCTTTATTTTACTCAGTACTATGTGGGAAATCTGAAGCTCCAAGAATGACCACCTTCAGATCCCAAAATGGTAGAGGTAGAAATTGATCTTGATGCCCTCTTTGGGACCAGCAGGGAAAGCTGGAGAAGTAGGTGCCAACCTCACCACAGATAGTGTAAGACATCACCTAGCAAGAGAGATGTTGTATATTTTATCACCACGCAGTGCAATCATTGAAATCAGTTATGCCAGTAGACGGATAAAGGTGGTATGCCTATGGACAGTTTGAGAGAGGAACTTCTTTTGATCTGCTTATTGGCAATTAAAGTGGTATTTAAAAATTAGATAAAATGTTGGCAGTGTCTTGTTAAGTCATATTGTCTTTTGCTAATCTTCAGTCAGGTCCAGGTAAAACACAAGGACCTTATAGCATTTTGTTCTGTCTCCCATACGAACAGAAAATAAGTTTTTTCTATTTAATTTGATATATATTGTACATTATCCTGGATTTTTTTCAATAAGATAGCTGAAGATCATGCTGACTTTGGGGCAGTCTTGAATGTAATTGGTATAGAGTATCAGTTTTTAAATCCCATAATGCAGCTTTAGGTTTAGAGTTTTACTTGATTACTAGTTAACTCATTTTTAATATGGATATACTTATGGTGATGTCAGATTCACTTTATAGATCACACCTAGCAAACATACATACATTTCTTTTTTTCTTGTTCTAGAGTTTAATTTTTTTTCTTCTGGTTGTATTGAGATATAACTGACATACAGCACTGTATAAGTTTAAGCTGTACAGCATAACAGTTTGACTGACATACATCATGAGACGATTATCACAATAAGTTTAGTGAAATCCATCATATATAGATACAAGGTTAAAGAAATAGAAAAAAGTATTTTTCCTTGTGATGAGACATTACGTACATTTCTAACTGTGGATTGACCTTAAGTCCTGTTACCTAAAAAGGATGTGCTAAACCACTCAGTAGCTATTCAGTAAATTATTAACAGTGAAAAACATGAAAAGAATGATATTTCTAATATAATTTTATCTCTTTAG
Seq C2 exon
CTGCCAGAACCATTTATTTTATTTCGATTGTACAAGGAATTTATAGACCTTGCAGTAGAAATCCAACATGTAAATGAAGAACAGGAGATGAAAAAGGATAACCCTGAGGACAAAAAATGGCCAAGTTCATCTATAGAAATAAGCCGAATCCTCCTAAAAAGCAAGGACCTTCTAAGACAATTGCCAGCATCAAATTTTAACAGCCTTCATTACCTCATAGTTCATCTTAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190:ENSBTAT00000005488:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]