RnoINT0020075 @ rn6
Intron Retention
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225604695-225606798:+
Coord C1 exon
chr2:225604695-225604832
Coord A exon
chr2:225604833-225606565
Coord C2 exon
chr2:225606566-225606798
Length
1733 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATGTAATTTTATCTCTTTAGCTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
Seq A exon
GTAAAGTTTTGATTTTTGTAACCAATCACCACTATATTTGATACAGTAAAAACGTGATTCATACTTTGTTTTTCAGTTCATAACCTTTGTACATAGACATTTTCATTGATATAGACCATACTGATGTCTCATAAATATTAATGTATAGGTAAAAGTACAAATTAGTCATACAATTAAAAACATATAATAATAATAATAAAGCACCGCTCATTTCACAGAAGAGAACACAGACCTTACAAAAGACCTCCTCCATGTGTTTTTCCAAGTTACAGCCTCCTCACTGCATATGGAAGTTCTTTCCTAACCATGTACAAGTTTTCCTGGGCATAAAGAAGAAACTAACATGAAGTGTTTATATTTAGTTTTAGAAACTTAGCTTGAAAGTGTAGTTTAGCTCTGTAAGGAAAGGCCAGTGTTGAACTGTTCCCCAAGCAGAGCAGTGTTTGGATCAGTTTGATTTTGTCTTCCCTAAGATTTCAGAATAGATTTGGATGGTCAGTGGGAGGAAATTTAAAGTGCACGTTTGCAACAACAAGTGGAGCTATCCTGTAAGCTGGATATACAGGAATATGGTCAGGAAGTGGGCCAGCCTAGATTGTCTGTTTCTGTGCTCAGTATTGGATCAGGAGTTTGTGTTAGCAAATTCAAAAAACCTATATCTATGGAGTAAAGTAAGTGGCCTCAGGCAGAAGCTTATGGTTAAGTGATAAGAATTTAGCACAATGTTGTGAGTCAGGTACAAAAGCTACTTGGGTCATGCCCAAATGGCGTTCTAGTGCTGGTAGTGCTGAACATACATGTCAGTCTCTGGAGTTCCAGGGTTCCGTTCTGGATCCTGTGTCTGTTTATATAGCTGTCATCCTGGTTTTTTGTTTGTTTGTTTGTTTTTCTGTGAAGAAAATTTCCTCTCTTTGTTCCTGTCTTTTTTGATTTTGCTCATGTCTAATCCTTGAACAAGGTGGGCCTTACTCACCTGTGTGTTTATTTTATATTCTCTCGATGGAGTTAAGGAGCAGATAGTAAGTGCCTAACTTTGCTCTGTAGTCCCTGTCCTTTCTCTGTCCATTCTCAGGCTTTCTAGTTGGTGCTCAGCCTTCACTCTTCCCACTGCTGGGAACTTGGGTCTCCTTAGGGGGCTCTTGAATGTCTGCCAGCTCTGGGGCTCTGGTCTTTCTGCCTCATCTGACGCCGTCTGTATTAGTGGGTATGTTTTCATTGGTGCTAACATCGGGATCATAATGAATGTAACTGTGCACATAGATGAGCATTTAAAATCCCTTGTGGAACATTTAGGTTTAGAATTTTATTGTCTGTGAGTTACTGTCTTAATTATTTAATTAATAACAGTGATTTCAGATCACCTTAATAGGTCATGTCTATAGCGAACATAAACATCTAAACTTTTTTATGTACCTGGATGGTCCCTTGCATGTATGTCTGTACCACATCCATGGTGGTATCCAGGGAGGCCAGAATCTTATCAAATCTTCTGGAACTGGAGTTCCAGACAGTTGTGAGCAGCCAACTGGGAATAGAACCTGGATCTTCTAAAAAAGCAACCAGTGCCCCTAACCACTGAGCCATCTCTCCAGCTCCAAACATACATAATTAAAGACCTGCTTTAAATCTTGTTAACCTAAGAGGTTGTGGTGAACCATTGTGTAGCTATCAATAACCGTTAACATTAGCAGGGAAAAAAGATTAATATTCATAATGTAATTTTATCTCTTTAG
Seq C2 exon
CTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCCGAAGACAAAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGGACCTGCTGCGACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563:ENSRNOT00000017076:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTGAAAAACTGTGCCAAGCT
R:
CGCTTCAGATGGACGATGAGG
Band lengths:
342-2075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]