GgaINT0037548 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14338736-14340692:+
Coord C1 exon
chr8:14338736-14338873
Coord A exon
chr8:14338874-14340459
Coord C2 exon
chr8:14340460-14340692
Length
1586 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
ATATGTTCATGTTTCTTCAGCTT
3' ss Score
7.38
Exon sequences
Seq C1 exon
GGTATCTATCGTGTGAATGGAGCCAAATCAAGAGTTGAAAAGCTTTGTCAAGCTTTTGAAAATGGAAAGGATTTGGTTGAGCTCTCAGAACTTTATGCACATGATATTAGCAATGTTCTCAAGCTGTATCTTCGCCAG
Seq A exon
GTATATGCTTAACAGGTCAAATGTAAAATCACTGTAATATAGCATATTCCTTCAGTTCAAGCAGGAAAAACTCCTTTTAGCAATCCTGCAACTAAAGACTGTATGAATGCCTTGTATATTTCCAGTAGGGTTTCTTAATTTTCTTATAGAGCATGTGATGGGGCAGAGAAAGCTGTGAGATTACTGACAACTGGTATTAAAATCTAGGTTCTGCATGGGCACAATGTGTGTATGCACAATGCCAGTACTATTTACAGAATTAGCTTTTATTTATCTGTTTGTGGTAAAGCCAAACCTTTTAAAACTTTTGGTTGCTGTATTTGTGTGTTTCATGCGTACATCAAAACATCCCCATATTTTTGCTTCAACACGCAAACAGATACTAATATTGCAGTTAATGTATGCTAGTGAATGTCTGATGAAACATAATGGTCTTGATGCCCTCATCATGGAGGGTCTATAAATCTTTTTCTTTCAAGATGGGAATTTAAAGCTTTAGGATTAAATTTTCCATCAGTGTGTACCTAATGACTAGGATGTTGCCCTGCGAGATTGCTGTGTCACTCAAAAAACTCAGTGACTCTGAAAGGAACATTCCTTAGGTGCGTGGTTTGGTCCCATCTCTGACACTAGCTGTTAAAAATAAGCCCTCTTGGGAGCATTCCAATCCCACAGTCGGCATTAAATTAAGTACTTTTGTAAAGCTACAAAGCTTAACTGGCTATTTAATCAAATAAAAAGGATAGCATATTATATACAACTTACTGGAGTAGTTAGAGGTGTTGTGCTGTATTTTGAATATGGCTTAACTCTAAAAGTAGTTAAATAACATGTTTTCTTGTCTTATTACTTCCTTTGTAGGTAATGTTTTTTTGTTTGTTTGTTTTTAAGGCAGACCTGCTCATTTTAAATGTAGGAACAATGTTTTAGAATCCTGATTTAAAACCTATTTGACACTCATTAATGCTGATTATTTTGAGCTTTACTATTTTTCCTACTTTTTTGCTTTTATCTAAGCTGGCACAAGGCAAATAATCAGTCTAGATTTAAGTTTGTTTTCTTTTGTAATTCTTTCTAGTTTATTAATATTCACTTTGCAGTACATTGCTGTTACACTGAGGCAATACTGCCATCATTTTTTCTAAAATAACTGTGTTATAACGTAAAATCCAATTAGAAAACTGGAATATGCACCAAACTGGATATCACATGTAATATACTCCCAAAGATAAGATGAATAAATACAGCGTTTTAACACGTATTGTTCTGTATCTGCAATGTAATATCTTCCCTCATAGCAGTCACCTTGAAATCTGAACCTGTGTTGGTAAGTGCTCAGTGTTGAAGCTCTTGTAGCAAAGGTCTGGCAAAAGATGTATGGAAGGAAGTATAAGGAGGAGTTTCTTCACCCAGATTTTTTTTTCTTTGACAAACTGTGGTTTGAGCTAATAAACAAAGACTAAACATCTTTAAAAACAAACAAACAAAAAAAAACACTAGACCAGACAAGATTGAAGGACAACTAGAAAGAAACAAAAGTGAAGATTCAGGCTTGAGTAGTTTCTGATATGTTCATGTTTCTTCAG
Seq C2 exon
CTTCCAGAACCCTTGATTTTATTTCGGCTTTACAATGAGTTCATTGGACTTGCAAAAGAAAGCCAGAGTGTCAATGAAGAATGGGATGCTAAGCAAGCTAGCCCCAAGTCAAAGAAAAGACAATCGATCTGTATTGAACTGAATAGGATCATCATTAAAATTAAAGATCTTCTGAAACAACTGCCTGTACCAAATTATAACACTCTTCAGTACCTTATTGGCCACCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTGAATGGAGCCAAATCA
R:
AGGTGGCCAATAAGGTACTGA
Band lengths:
357-1943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]