BtaINT0022499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21796074-21799255:+
Coord C1 exon
chr2:21796074-21796188
Coord A exon
chr2:21796189-21799168
Coord C2 exon
chr2:21799169-21799255
Length
2980 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTTCAATATCTTCTGATAGCTT
3' ss Score
6.74
Exon sequences
Seq C1 exon
TCCTGTACCAGGCCCATTTCCTCTTCTCTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATCACAAGTTCTAATGTGCATGTTCCAGCTGCAGTTCCA
Seq A exon
GTAAGTTTTTAGACTATTTAATATTTTCTTTATAGAAAACTGATCTTTATAATCAGAAAATACACTTGGGGCTGCTTGATTGGTTTGTGAAACTAAGTTCAACAAAATACTTAATGTTGAGTAATATTTACTCATTGATATTTACTGTGATCGCGTAAATCTTTCAAGGCAGACATAACTGGATAAGTAACATTTTTCAATCCTCAAAATCTTAATTGTTTTCCTTTTATTTTTAGTATTAAGAACTAATAATTTAGTAATTAAGAACTAATTCCTAAGGTTCAAAAGGGAGGGGACATATGTATACCTATGACTGATTTATGTTGCTGTTTGGCAGAAACCAGCAAAATTCTGTAAAGCAATTATCCTTCAATTACAAAATAAATTTAAAAAATAAACTTAAGGTTGAAACTAAAAAAAAAAACTAATTCCTTCTTCAACCCATTTCAATTTGCTAGATTTGTAGAATTCAAATATTAACATAGATTTCTGTTCTATAAGAAGATATTTATACTGGAACATTTATCAGGTAACTTCATGTTATTTTGATTATTAGAGAAATCGTTTATAAAAGCATTCTTAACTTTTATGATCATGTTGGGTTTATGGAATTCCTTTGCTTTCCCAAGCATGTGAAAATCTAAATGGTCTACTAGAATGGACAATAGATAGTTTCCACTTTTCCTAATGAGAAGATCAAAAAGAAGTTTTTTGAAGGGCATGTTAATTATATAAATGTTGAAAGACATAGTAGTTAAATATCTACTTATACTATTCAGTAACTTAGTGAGTATTTAAAGGCACATTCTTCTGAATAATATGTTACAAATAATGCTTTTTTTTCTATTCTCACATTTCATAAAATAACAGAATCTTCAAGTGTGTCTTCAACATTCAAGTTTTTGTCATTAGAACCACTTTTTAAGGAGCCTCACAAAGTTTTCCGAAACACATTATTTTCATCCTCATCTAAATAATTTCAGTGTAACACTTTTTGAATCTACTATTATAATCCTGGAAATCTTACATCAAGTCCTGATACTCAAAAATACAGTCTCTTTTTATCACCTTGTAGATAGATATTTCTGGTCAGTACAATATAATCATTTATTGTATAGTTCTTAAAAATTATTTTTAAAATGCTCTTTACACTTTTGGTGAGATTATATCCTCATGAATATTAACTAAAATTACTATTAAATATTTATTTTATTAACTAAAGTGACCTTTCTAAGTATCCAAAATTAGCATTGATTGTAATATTTCAGATATTTCCACAAAATCAAGGTAATGTGTTGTCTTCAAATGGAACTTTGTAGTTCAAAATGCATTATTTGAGAGTTTTATAAGGACTCAAATATAAGGTGACTACTCTCTCTTTTCTCCGGATATTTTTGATGGGGAAGCATTCTTGTATCTGGGTTTATATGGTATCCTGTTAAATGTAACTGCAGTGAGAGAAACTGAAATGAAAAAGAGATATACTTTAGTATACAATAACTAATCATTCACTGTTGATATTATGTTTTTTTTAAAGGCAAAAGACGATGGAAAATCTGTTAAGTAGTAGTATTAGTGAAATTACTAGAGGTAATCAGGTTCTCCTTTGTCATTATGCTGTATTTAATGTATTAAAGAACTTTCATGTATATATTTTATAAATTTTATATGTATATATTTTAGAAAAGCAAAGTTCATTGTTGAAATTACTTTTTATGCCTAGTTATACAGGTTTTAACATTCTTTCTCATTCAAAACGGAGGTGTGACAGATCTGTGAGAAATTTTGCATCACTGTGAATATTATTAGTTTCTGTAAGAAGGAATTATTAAAAATAAATTATGAGAATTGGAGATTAAAAATGAATGTCTCAGAAAAATTGACAAGTTTTGAAGGATAAGTCAGGATTAAGATCATTAAGGGTTCAGATACAGTTTTCTGAAGTTTTCTGATTCTGCAGTCTCAAATAATTTTATCAATTATTATATTTATATTACAATATAAATATTAATATATTGGGTTGGCCAAAAAGTTCATTCAGTCCCTCCCCATGAGATGGCTCTAGTAGCACTCAGTTGTCTTTAACTTCATTTGAAACAATTTTGTTAGATTGTATTGTGACAGCTGCTGTATTAGTGTACATTTTTTTTAAAAAAATTGAAATCGGTGAATTATTTATAGCCATTTTAATATTGAGGATGAAAGAAAAAGCAACATTTTCAACACATTTATGCTTTATTATTTCAAGAAAAGTAAAAACACAATTGAAATGCAAAAAATAAAAAAGATTTGTGTAGTAAATGAAGAAGGTGCTGTGTCTGATAGAACGTGTCAAAAGTGGTTTGTGAAGTTTGTGCTGGAGATTTGCTGGATGATGCCCCATGGTTGGGTAGTCCTGTTGAAGTTGATAGTGATCAAATCGAGGCATTAATTAAGAACACTCAATCTTATGAGTTTGATAGCTGACATACTCAAAATATCCAAATCAAGCACTGAAAATCATTTGTACCAGCTTGATTAATCATCACTTTGATATTTGTGTTCCATGTAAGTGAAGTGAAGAAAACCTTCTTGACTGTCATTTCTACATGTGATTAGAAAGATAATGAAAACATTGCATTTTTAAAACAAATTATGACAGGAACCTAGAACACTTCTTTGCTCAAAAAGATAAAAGGTTTTGGGAAGACAGAATCATTAACTTGCCTGAAAAATGGCAGAAGGCAGTGGAACAAAACAGTGAATATGTTGTTCAATACAGTTCTTGATGAAAGTGAAAGATGTCTTATTTTTACTTTAAAAACAGAAGGAACTTTTTTGCCAACACAATATATACTTTCTGTTAATGTGTAATATATTGTCATATACATATTAATATATACTTATTATGTAAATTATTATAGCAGCCATTTTGCAAATAAAGTACAAATCTCATTTTGAATATATTTTCTAGTAATTATTTTTCAATATCTTCTGATAG
Seq C2 exon
CTTGTTCGACCAGTCACCATGGTGCCTAGCGTTCCAGGAATTCCAGGTCCTTCCTCTCCTCAACCAGTGCAGTCAGAAGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295:ENSBTAT00000002963:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]