GgaINT0046059 @ galGal3
Intron Retention
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17811128-17811494:+
Coord C1 exon
chr7:17811128-17811242
Coord A exon
chr7:17811243-17811407
Coord C2 exon
chr7:17811408-17811494
Length
165 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTATACTTTATCTGGTCAGCTT
3' ss Score
5.15
Exon sequences
Seq C1 exon
TCCAGTTCCAGGCCCGTTTCCTCTGCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCTATTACAAATTCCAACGTGCATGTCCCTGCTGCAGTTCCA
Seq A exon
GTAAGTAAGCGTGATGTTATATTAATTTGAAAGTGTAGCAGGTTTGCATAAGTGCAGCATAGAACTTGAAACAGCTGTTTTGGTTTCAGAGGGTAGTGGTGTCATATAATCTGTATTATGATAACATACTCAGGCTTTCTTCATTTTTATACTTTATCTGGTCAG
Seq C2 exon
CTTGTTAGACCTGTCACCATGGTGCCTAGTATCCCAGGAATCCCAGGGCCTTCCTCCCCACAGCCAGTGCAGTCTGAGGCTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287:ENSGALT00000015107:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTCCAGGCCCGTTTC
R:
CAATTTAGCCTCAGACTGCACTG
Band lengths:
202-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]