HsaINT0013801 @ hg38
Intron Retention
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:175111568-175114108:-
Coord C1 exon
chr2:175113994-175114108
Coord A exon
chr2:175111655-175113993
Coord C2 exon
chr2:175111568-175111654
Length
2339 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
TTTCCTTATGTCATGCATAGCTC
3' ss Score
7.25
Exon sequences
Seq C1 exon
CCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCCA
Seq A exon
GTAAGAAAGTTAGACTATTTAAATCTCTATCGCAAAACTGATCTTTGTAGTCAGAAAATAAAGTTGGCTGCTTGACTGGCTTATGAAATTGAATTTAACATAATATTGATTAGCAGTTGATAGTATTTATTTGTTATCATTGTAATAGCATATACCATTCAAGGTATAGCTATTTTTTCTCTTCTCCCCAAAACCTTAATTTTTTTTTTATACTGAGATCTTCTTATTCAACCCATATCAATTTGACTGGACTTGTAGCATTCAAATATTAACACAGATTTCAAATTTTAGAAAGATATTTGTACTAGAATACTTGTCAGGTAACTCTGTGGTATTTCTATTAGTATGGAAATTGTTTATAAAGACACACTCTGAATTTTTGTGGTCAAGTAGGGTTTGTAGAATCTTTGATAGCCCAGCATGTTAAAATGTAAATGTTCTAGAAAAATAATCTTTCACTTTCCCTGTGAAAAGACCCCGCAAAAAAGTTTTTTGAGGGGTGTGTTAAATATATAAATTTTGAAAGACGTAGACAAAATAGTTAACTATCTACTTATGATATTTAATAGTTTGGCCAGGCATGGCAACTCATGCCTGTTGTAATCCCAGCGTATTGGGCGGCTGAGGTAGGAGGATTGTGTGAGCCCAGGCGTTTGAGACTGCAGTGAGCTATGGATCCTGCCTGGATGACAGGGCAAGACCCCAAGTCAAAAAAAAAAAAAAAGTAATAGTTTAATGAACATTTAAAAACACATTGTTTGGAATAATGTGTGTTAGAAAATTGCTTTTTTCTTACTTACATTACATAAAACAGTTTTATTCAAACAAACTCTTCAGTTATGTCTTTGACATTCAAATTTTCATCCTGAGAACCACTTTTTGAGACATCTAGCACAGTTTCCAGAACACAGTATTTTCTTTTTCATCTAAATCATTTACGATATTACTTTATGAATCTCTCTATTATTCTCTCCCTGGAAATCTTACACCAAGCATTAGGTACTTATTTATGTAATAAAAAGATAGTTTTTTCTTTTACCTTCTAAGATGCTTGTTACTGATCAGTACAGTGTAATCATTTACAGTGTAGCTTTTAAAAATTATTTTTAGGCCAAGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACCAGGGTGGGTGGCTTGCCTAAGTCCAGGAGTTCAAGACCAGGCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAATAAACACAAATTAGCCAGTTGTGATGGAAGCACCTGTAGTCTCAGCTACTCAGAAGGCTGAGGTGGGAGGATCACTTGAGCCTGGAGGTTGAGACTGTAGTTAGCCGAGATTGCACCACTGCATTCCAGGCTGGGCAACAAAGTAAGACCTTGTCTCAAAAATAATAAAAAATAAAACTTATTTTTAAAAGCTTACTTATAGTAACATTCCAACACTTTCGGTGAGATTACCCCCAAGAATATTACTAGGATTAATGTTTGATATTTATATCTTTTTTTAATTAACTAATTCTTCCACGTGATCTTTCAAACTATCCAAAATTAGCATTGATTGACGTAATTTCAAGATAATGTGCCTTCTTTAAAAAGAACTTTGTTCAAAATGCATTATTTGAGAGACTTTGTAAGGACTCAGATATAAGGTATCTGCTTCCTCTTTACTGAGAATATTTTTTTGAGGAGGGAAACATTCTTGCCTTGTTTTTGAGATTCTGATTATCCTGTTACATGTACCTAGTGATGAAAGCAACCGGAAATGAAAGAAAAGATATGCTTTATTTATACAGTAACTGTGTTCACTCAGTGTTAGGTTTAAGAAAAAAAAGGAAAAAACCAAAATGGTAAAACCTGTTACAGATTATTTCAGAAATTATTACAGTGTGTTATTTGTTATTATGTGGTATGTATAAGAAAATTCATTGTATATATTTTTAGAAAAGCAAAATTCATTGTTGAAATTATTTTTTATGCCTAAGTGTCACAAGTTTTGACATTCTTCCTTTCATATTCAAAATGGAAGTTTGACAGATCTTTGAGAATTTTTGCATTAATCACTTTGAATATTATGAATTTCTAACAGGGACCATTAAGAAAGAAATTGTAGAAACTGAAAATTAGGAAAGCACACGTCTCAGAAATTGACAACTTTTGAAGGATAAGTCAGGATATAAGACCAAATAAGGATTTGGTATAGAGATAAAATCAGCTGGTGATAAATTTACAATGTTCTGATTCTTAAAGTCTCAAATTATTACAACAGCAGTAAAGTACAAATCTCATTTTGAATATATTCTCTAGCAATTATTTTTCCTTATGTCATGCATAG
Seq C2 exon
CTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGTCAGAAGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966:ENST00000264110:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development