MmuINT0020241 @ mm9
Intron Retention
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73684254-73688774:-
Coord C1 exon
chr2:73688646-73688774
Coord A exon
chr2:73684433-73688645
Coord C2 exon
chr2:73684254-73684432
Length
4213 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TTTATCTTAAAATTAAATAGGAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATGCCTCTAGATTTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGACAGCCCTTTACCTCACCCCGAGTCGACTACCAGTGATGAAAAG
Seq A exon
GTTAGAACTATGAAAAAGATACTTCAGGAAATTTAATTTTTTTAATTTAATGCCTTATTGTTTAATTTGTGGGTATGCATGGCATGTGATGGTCAGAGGACAACTTGTAGGTGCCAGTTTTCTTCTCACGCTATATAGGCCTGAGGTATCGAGCTCAGATTTTCAGGCTTGGTGTAAGCACCTTATCTGCTGTGCTGTTTCACTGTCCCAAACTTGGTTAGTTTTAATCTGAAGGAAACATTAAGGTATGACATTTTACATAATCCAATAGAAGATTATAGGTTTTATATACAAAAACCCGTGTAAATACTTTAGGAAAATTCCATCTTCATAATTATTTTTATTAAACTGGATATTAAAAGAGAGAACAACTTATTTAGAAAAGGTGTTATTTGAAGATATGGAAATGTATACAGCTGAAACAGGATGTCTAAGAATGAGTAATTATTACTCCAGTATATATTTGATATCAACGGTGAATGATATTTCCTTAAGTACATTAACTTAGGTTTTCTGGGCTATTGTTAAGTGTTAAGTTACATCATGATGTGTACTTCATCACATATTCACTTGAAAAACACATAAAATGAGCAAATTTATATAGGAGCACTATGTCTATACATAAAGAGACAGTGATAGTGTTCCTTTTTAATGTTATTATAAAATCATAAGATGAATAGATTTCTACAATGAGAATATAGTCATTTATTGTTGACAGGAATATATCTTTTTTTTAAAAAAAAGTCTCAGTAAGCAATCTCATCATTCTTTCCAAAGCAGAGTGTATCTACACAAATGTAGACAATGTAGCCTACTATATACTTAGTATGTTACAAGCTATTATTCCTAGATTAAACCTGTACTACTTGATACTACTATATTGACCATGTAGGTAATTATAGCACACAGGTATTTAAACATAGAAAAGGCACAATTAAAAATGCAGGCTGGGAGGATGGTTCATTGAGTAAAACTTGCTTCATAAGCCTGACAACTTGAGTTTTGATTCCCCAAAACCCACATAAGAACCAGATGCCGTAGCACTAGTGCCTGTAATCCCTTCATGCTCTTAAGGGGAGATGAAAGGAGGAGGAGGAGGAAAATCTCCAGAAATCCTAGGTCTGGTACCTAGTTTACACAGTGGCAAGAAAACTTTGTGTCAAACAAGATAGAAAGGTAAAGACTCATACCCAAAGATTGTCCTCTGGCTTCTATATGTGCATGCCTGCATCCCCACACACAAACATGTACACATACAGGTATACTCAAATCACAGAGAAAGAGAGACAGACAGACCGCCTGACTGACCACCAGTATAAACATTTATACAGGGTATACTTTAAAGGACACCAACCATGAGTAAAGCTTACAGAGTGGAGTTTTATACTTCAGGACTAAGTGAATGAGTGTCAAGTGAGTGTGAAGGCCTGGGACATGACTTTATACTGCTCTTGGCTATACACTATATGTAGACAATACTAAATGTTTCTTTTCAGTTCTTCCAGTAACAAATTAATCTGGCTTATTGTAACTTTTATAAAGTTCATTTTTTAACTTCATCTCTAATAACATTTATTTTAAATCACAAATAGATGGTATAAGAATATAATAATACTTTATTTTATCCTTATTCTATACTACTCTTTCTCCCAATATTGAGAATTGAAATTCTGGGCAGGTAGAATTCTTGGAAGCAAAGGCACATACTCCCTTTCATTAGATTTCCCAAAATCACAATTTTTAATGGTTATACTTGATTATTGCCTTAGATATATTTAATTATCCCCTTATTTCTTAACATACGGTCATTTCCACATTTATTATAGTTATTAAGGATCCTGAGAACAGCCTTATTTCCCTGCAGAGCATCCCTTTCCCTTTATATTTTCCAGTTTTCATTCTTGTGGCTAGTTTATCACCTTCTAGGGGTGCTGCTTCTGCATTCCTTAGTCATTAATTTCTTTTAGGTAGTACATAGATCCACTAAGTTGTGGAAAATCAGTTCGGGACCTCCTCTGTTCTAATTTTCTTTTTAGGGATTTCCATCAAGAATTGTAATAGAAACTATAAATTAGTAATTCCCAAATTTACATCAGCCAAGGTATCTCTCCTGATTGCTGAATACAGTTTCTCTGTTGTCATCTCCTTTACTTTGTCTAGGGAACATCTCAGTATGTCTGAAACTAAGCCCTTAATTCTGTCCTCATTTTTCTCCTCTGAGAAAATTTTCTCTACCCATGCATGGTGGTAGTATGTCCTTGTAATTCCTGCACTAGGAAGGTAGTGTCAGGAGTATTGCACATTCAAGGCTAGCCTGTACTGCTAAAACTTTCTGGGCTATGTAGCAAGACCTGCCTCTCATTTCCAATACCCTTCCTGCACCTTCCAACAAAAAAAAGAAAGGGAAATGTGCATCTATCTACTTATTTAAGCAAAGCATTTAGGTGTCACCTTTAGTTCTATATTTTCTACCTTGACTTTGAAACCAATAGCAAATCTTCATTTACCAAGCATGTTTTGAATAAGGTTCATACCACTTTTGTGTTCAGTGTAATTGTCTTAGCTGTCATCTATCAGTTGTACCACTACTACCCGGCTTCTCTCTCTCTCCCTACTCCAGTGCTGAGAATGGCATGAGAGCCCCAAGCACGCACTTAAGACTACTGAGGGTTCCCCTTCCCTCTATTTTTCTTGCAAAACACAAAGTTTCTTTATGTTTCCCAAGCTAGTTTCATATTAATAATCCTCTGTGTGAGTTTCCCCAGGTTGCTGGGACTGTATGCATGCCAACCATACCAGGCTAAATTTCCTTTCAAACCTGCTTCTATTTTTGATCTGCTTCTCTTAGTTCTAAGTGTGGGAACTTAAAAATTTATTGAGTCATTCTTCTCTGCTGAAAATCTTCTAGCAATTTGCTCTTGAAGATAATTTATATTTATTCCTTAGGAAAAGCCTCATTGATTTGACTGTCTACTCATCCATCCTCGTTTCCTGCTCTCTCTATCCATCAAATATTGTAAGGTTTTCCTGCCTAGCATTCCCCCTTCTCTATAGCCTGCCTCTTCTTGATTCTTTCAATATCAGATCAGATTTCTTTTTGCAAGGTTTTCTTCCTCACTATTACAGTGCCCAGCTCTACCTTACCCTCTGCTAAATCATTATTTATTGTAGAATGTTTAATGTCCTTTCTGGTAGGAAGTTTCTGTGATGGTTTTACTCATTGTCATTCTGCTCACTAGTTCTTGAGTTGGAAGTTTTTAGATGTGCTGAAAACTGTAGTTACAATGCTACTAATTTCTCCTTCCTAGTATCTTACTAAGACTCCAACTGAAAGTAGCTATATAAAGGCCAGTTCAAAAGGATACAATAGTTAGGGAGTTCTGGGTAAGGCCCTCATCTCTTTTGTAATCTGAAAAAATAGGAAATATTTTAACAATCATCCTGGCTGATTCATAAATTCTATTTCTCTTTAGTTTGGAAAGCTCTCAGCTCTACCTGCTAATTTTGTATGACTCACTTGGTCTTTTGATACTAGAAAATTAATGTTACCAAATGAAAAACTACCTGAGATTAGCAGACTTTTTTTTTTCTTAATTTAAAATGTCTTAAAACATTTCTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTTGAGACAGAACTTCTCTGTGTAGCTTTGGCTGTCCTGGAACTTGCTCTATAGTCCAGGCTGGCCTCAAACTCAGAGATCCACCTGCCTCTGTCTCCTTGGGATCAAAGACGTGCATCACCACCACATCTGAACACCAAATTGTTTAAGTCATAGCACTATCTTGCTGGATCAGTTTCTTGATTTTGTAATACAATAAGCAAATAGGATAGGACAATCCCTTGCAGGTTTTGATTTTTGATTACTGACAGTAAATTGTATTTGTATTTCTTACTGAAATTCTCACAGAAACATTGCCAAGTAGCCCAGCCTAATTTATTTTAGAGTAATAAACACATTGAACCAAAAACACAGATTTGGGGTTTTTTTTTTTAAATTTTAAGAATTACATTTGAACTTTACAACTGCTTAGATATTTTCAATTAACTTTAGATATTAATTTACTTGTAGAGGCATTAAGTATTATCTAGTGGTTGCTTTCATAAATGTGTTACATTCTGTTCACTGGGATACATGAATTAACTTGCGTTTTTAAATACTACCCTTTATTTATCTTAAAATTAAATAG
Seq C2 exon
GAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATCGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTCACAAGTTCTGACTCAAGTGTAATTATTCAACAAGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104-Atf2:NM_009715:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.612
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: