BtaINT0022497 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21790311-21794577:+
Coord C1 exon
chr2:21790311-21790439
Coord A exon
chr2:21790440-21794398
Coord C2 exon
chr2:21794399-21794577
Length
3959 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TCCATCTCATTACTAAATAGGAA
3' ss Score
7.29
Exon sequences
Seq C1 exon
ATGCCTCTAGATTTATCTCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAG
Seq A exon
GTTAGAAGTTTGTATTTACAGAAGAAACTCAAACTAAGTGGAAAAAAAAATCAGCATTTTCAGTAAAGTCTAATATTTGGTCTACATAAAATTTTAATGTAATATGCCTTAATCGGCATCAGGTTGTACTTGTCTTATATGTGAAAGCCTGTGAATACTCAGATATTTTAGGGAAAGAAGATAATTTGTTTATAGATAATTTTTTATGACAAATTATTGGAGAGACTAATAGTCATTTAAGATAAACCTGTTATTTTTTTAGAGGATACATACATTTATAAATTTAATTTCTCTGGGTTTTGCTATTTTTTTTTGCTACTTTTATACAGTGATAGCTTAATTAAGAATCTTTGCAACTAAAAATTGTTTGAATAAAGGTTATTTAGACTTTTAAAGGGTTAAAGGAATAGCTACTTACTTCAGCAGTGATGTTTGGTAATACCAACTAATATGATGACGATGACACTGTCTTACTTGGTATAGTCTTTTTGTAGTAATTTAGTGCCTCATTCCTAGATCTGAATACTTTGGTACCTGGGGCCAACTGGGGTATATTATGTGCTGAGTTAACCATTACTACAGATATTTCTCAATTAATGTTCATTCATTAGCACATCTACTAAACACATTTATTTGGAGGCATGGGGCACAGTGAAAGGCAATGACAGTGTTCTTTTGTAGGTTATGTTACTCTAAAATCATAGCCTAACGGACTTTTGCCATGACAGAGGAGCTAGAAGTAAGGCAGAAAAGGTAACTATTTATTGATACCTAGGAATAAATGCTTTGACCATTAGGTGTTTTGTATTTTTTTATTTACTTATAATAAAAGTGCATTCTCATTATTAAAAAACTTTAAGAATCCAGAAAAATATAAGAAAGAAAAAAACACCTTTTACCCCATAACTGAGCAATAAGAATTACTAATATTTTGAAACATTTTTCCTAGATACATGTATACCTTTATACATAAAAATATACATATATGTATTAGGCTTCTGTAGTGGCTCAGACAGTAAAGAATCTGCCTGCAGTGCAGGAAACCCGAATTCAGTCCCTGGGTTGGGAAGATCACCTGGAGAAAGGAATGACTACCCACTCCAGGATTCTTGCCTGAAGAATTCCATGGACAGAGAGGAGCCTGGCAGGCTACAGTCCATGAGGTTGCAAAGAGCTGCCTAACACTTTCACACATATACAAGTGAATAGTTACATAGAAGTATAAAGGGATAAAAAGATAAATACCAAGAAGAATCATAGTTTACTTTTTTATATCATGTTTTAGACATTCAGCATTAATCAAGATTTTCCCATGCCATTAGAAAATTTTCCAAAGTCATAATTTTTAATGTTTGCACTTTATTTTATCATTATCATAATGTATTTACTGATCTTGAATGTAAATATTGTTTCCACATTATCGCAGTTATAAGAAATGCTGTTACATCTTTGATATAAATACCTTTTACCTAGAGAATATTCCAGTCCCTTCACACTCAACAGTTTTTTCCTGCTGGTTGCTGCTTTATCTCTCTTAGGGGTATTTCTTTTTCCTGCATTCTTCAGTCATTAGCTCACACTGGGCAGGGCATAGTTATTCCAAGTTGTAAGAAGTAAATTCTGAGCCCCCTTCTCTTTCTCAGTTTTTTCCTTCTTAAATGCTCTCATCCAGACATGTAACTTTAAAAACGATCAACCTGGTTTTCAAATTTATATCAACCCAGATATTTCCCGGATTTCCATATTCATATGCAGCTCTGTCTTGACATTTCCTTTTATGTGTCATCTTAAACGTAGTACGTCTGAATTAGAGCCCCGCCCCCCAGTCTTCTCTGTCTCAGTAAATTTTCTCCCATCCATTCTCTAGTTGGCTCTGGCCAAAAATAAAGAATACTTAATTCCCTCTTTTCCTTCTCAGTGAAACCAGTAGCATATCTTACCAAACCTACTTCCTGAATATATCCTTAATTTATCTGTTTTATCTTCACTGTCACAACTGTAGTCCAAATCATCTTTTACTTGAATAATTAACAGTTACCTTCTAATAACTATTAATAATTATTTGTTAATATATTGTTCAGTTAATATAACTTTTAACAATTACCAGGACTTTCTACTTCCATCTCCAACCTATTTTCCATTGGCTGTATATTTTTCTTAATTGGTGGCTTTGTTTTTCTTTTTAATTGAAATGTAACAAATATGCAGAAAGTATCCAAACACAAGCATATACAGAATACATGTACATGTACATGTATATCTGAATATATATGTATGTGAGTGAAAGTCACTCACCAGAATACTGGAGTGGGTAGCTGTTCCCCTCTCTAGGGGACCTTCCCAACCCGGGGATCGAACCCAGGTCTCCTGCGTTGCGGGTGGATTCTTTACCAGCTGAGCCACCAGGGAAGCTAGGATGTATATTTTTTAATATATTATGTCACTTCTCTGCTTAAAATCCTTCAGTGGTTTGCCTTTGCATTTAAGGTAACTCACACTTCTTCCATAAGCCATCATTGATTTAGACTTGTGTTCTTATCCAGCCTCACCTCATGCCTTTTCTGTGATAGTGTCCATCAGATATTCTAAGCTTTTTCCTCCCTCAAAGACATTGCTCTTGGTATTGCTTCCTTCTCCCTAGAATGCACTCCTCATCTTTTCAGTACCAGTTCAAATGACATTTTTCAAAGAAGCTCACTTTACCTCACTATACTATCTAAAGTAGCCAACTCCAACTTTCCCTCAGTTAATCTCTCATGATTTATTGATATTATATTTATACTGTTAGCCTATAACACATTATTGTCCAAAATTTTCTTGTTTGTTTTACTTGTGTACTGTCTCTTTTCCTACTAGTCCTTCAGGGCATGTTGTAATTTCTCAAATTTGTCAAGTAAACAAAGTTCCAGTAGTACTAGTTTTATCTTTCTTCCTATGTAGCTTAATAAAATTCTGAGAATAAATGGCAGTATAAAGGCAAATTCAAAGAACATGGTGGACCAATTTTTATTCTAGTTATGGAGTTCTGGATAACCTGTTTTCTAATCTGTAAACTGGGGAAGAGACCCATCTATAAGGTTCCGTGTTTTTCTTTACTTTGGAAAGATCTTACTCCAGTAGTTTAGTTTTACATTCAAGGTATTAATATTACTTCACCTTTTGATATTGAGAAATTATTGGTAATGTAGAGATAGTTACCTGAAATTAGCAAACATTTGTATTACTTAAAAAAAAATTTTAACATTTCTATTATTGAATTTATATCAACTATAAAAGAGTCTCCTGGACCTATTTCTTCTTTATACAATATAATGATGGAGTAGGACAAGGAAGTCCCATCTGGATTTTAAGTTCTGTACTTCCATGAGCATGGAATTGTAGTTTTATTTTTTATTAGAATTCTCATGGAGTTATATAGCCAAGTTGCCCAGCCTAAGTTATTTCTAGATTGATGGTAAAACAAGTTGTACTGAAAAACCACTCAGATGTTTTTTAAATTAAAATATTAACATTGCATTTGAAACAACTACTTCTACAATTTTCTCTTTAGTTCAGTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATTGCAGCAAGCCAGGCCTCCCTGTCCATCACCGACTCCCGGAGTTCACTCAAAGTCACATCCATCGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGCCTTTTCCAATGAGTCAACTCTTCACATGAAGTGGCCAAAGTACTGTATTTTCTCTTAATTAACTTTAAATAAATATTAATATATTTTGGGGTGATACTAAGTACTAAGTTTGTGGGGCTTTTTTAAGAGATGTGTTATATTCCTTTCATAAAGGTACATGAATTGACTTGGATTTTTAAATTTCATTGTTTCTCCATCTCATTACTAAATAG
Seq C2 exon
GAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCTTTACAAGTTCCCAATGTGCTGCTTACAAGTTCTGACTCAAGTGTCATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCGTCCTCCAACAGGCCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295:ENSBTAT00000002963:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.608
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]