DreINT0034525 @ danRer10
Intron Retention
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27534697-27538179:-
Coord C1 exon
chr23:27538049-27538179
Coord A exon
chr23:27534862-27538048
Coord C2 exon
chr23:27534697-27534861
Length
3187 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGACTTCTTTTTCCTCGCAGTTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
ACCAGACGCCGACTCCCACTCGTTTCCTGAAAAACTGTGAAGAGGTGGGCCTGTTCAATGAGCTGGCCAGCTCCTTCGAGCAAGAGTTCCCCAAGGCCCAGGAAGATGAGGACAAGAGGGCCAAAAACCCG
Seq A exon
GTGAGCTGTGGGACTGGGTGGAGGATTCAGTCATACAGTCAGACGTGCTCCAAACATGAGGAGCTCAGGCTGCCTGCTGCCAAAACTCAGATTTATGGAGCGCAGAGTTCCCTATCAGTTCTCATGTGTAACACTGTCTCGTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTAACTCTCTCTCTCTCTCTTTCTCTCTCTCACTCTCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTTCATCTGTCTTTCTTTTTTCCATGTTGCCCGTTCCTAATTCAGGAGCACTAGACATGAGCTTGCAAACGCCTTCAGAAGTGCATTAGATTTGTGTGGGGTTTATTTGTAGACTACTTTAATTCTAATAAAAAAACTGGTTACAATTTAATTTATGCTATCCTTGTTACAGTGTCAATAAACATTTATTGCATTTTTTAAAATTGAGTAATAGTAATTAATTACATGTAGTTACTATCAATACTGTTAATATTATGGCTGCACGATTGCTGAAAGTCTGATAATGAAATGTTTTATTTTACTGCGATAAATTTTGTGATATGAATACAGTTTCAAAAGATAGTTTTAATAGCTCTATTTGGCGGTTAATGGAGTGATTCTAGGGTGTAATTCTGGGTGATTTACTTGTTAGGTTAATGCAAAGACGCGAAAAGACATCCTGCGGCACGATACGCACAAACGAGGTGGCGAGAATGATGCGGCATGAGTTGAGAGTTTTGCACAATTGAAGTGCTTAACACATGTATCGCTTGAGTTGAAAAATCGGAACTTCAGTGGACATTCGTGCCACGTTAAGCAATCAGGAGCCTTCTCTTGTAGGGGAGTAATTATGACGTAGTGCCTGTTGTTAGTGTCCCGAGGGGGAAATCCTCCTGCTGACACCAGACAACAGTACATCAAACTGGGCTCAGCTCAGTCGGAAGCACCGCTGAAAGCTTCCATCATCCAGGTATAGTTTCTGGAGGAGTTTATGAGCTCACAGAGCTGGGTGCTCCCCAGAATAGATCTAGTGGTCTCAGACACGGCACCAAACAAATCGGCACTGTTTTTCAGTCTTCCTAAAGCACATAAACACAGCTATTCTCTCAATAAAATCCATGTTAGCCATTTAGCAACCAAGCTAGAGTCACTGGGCAGACAGAAGCCCTGCCCATGATTTGAATCTGCGTCTGTTGCGAAGTGAACTTGACTTTCTTCATGTATCTATTTACGTGCAAATATCATGATTTATCCATTCATACAGCGTTTGGTGTGAACACAGCATTACAGTATTCGGGTACAGAAATTGAATAATCAAAATGAAAAAAAAAGCTTTTTTTCCCTTTGATATCAAAAAAAATATTAGTACGAGTTAAAAATATTGTTTAGTTTACACCGTCAAAAGAAATAAATGAAAATGAAGTGTTATACATTTGCCAGTGGTGCTTTGAAGTTTAGATATTTGGGTTGGAAACGAGACAAGAATTATCAATAGGAAATGTTTTTGCATAAATCATATAAATTTCACATAAATACAGTGGTTAAATACAATTCTGTAGCTCCAGGTCAACTATAATTTAGACTGGACATTGCATATCTTTGCAATGTGACTATTGCAGATGCGCACATTGCACTATCGATGCTGAAACGATTAGGCCTGTCACGATATCTATTTTTTGTCGTATGATATATTGGACCAAAGTATATTGTGATAAACAATATTATTGTCATTTTAAGACAATTTTAGCCACTCCTTATCTAATACCAGAATGACAGTATAATATCATCACAATACAAGTACACTCTTCCAAAGAACATACAATATTTGATTCTTAAGAATATTTAATTTAATTATAGTTATTTTTACAATTTAATAATTAGGCATTGGAATCAGAATGAGAAAACACATATCCTAAATAATAAATAATGTTAACAAAAAAGTGCAAGGTGAAAAGTAGGAGGCTGCGATATCTGCTACCAGATCTATTTTCAGTTGTCAGACACCCACATAAAAATATAGCATAGTAATTTATAGTAAATACTATAGTGTATTTTTAACCATACTGACAATGACACCTCCAGTTAGAGGTAAAGATGTTGCACAATCGGCTAAAATGTTGCTAGAATTGTTTTTTTTTGTGTGTTTTTTTTGGTATTGGTGATATATACAGTATTGCATCATCAAAAATGATTGCGGTCATGTCCATGTGTTGTGCGGCAAGTCAATATATTGATTATTGTGACAGGCCTAGAAACCCTATATTGTGCAGCCCTAGTCAATATGGTGGCCCAGTAGTGCACAACAAATGAAATTTAAGAGGCAAGCACCCACAACACAACAGAAACAAGCCAAAACACAATAGCAAAATCAAAAAACAACAGATTTTAAATAGCAGATATATGTTTAAAACATTAAAATCAAGCCCCCATTTTATTTCTCTCATACTGTGTGAGAAGTGCTTATCCACAAATAAACACATATTTAGATGGTTAGTTTTAGCAATCTAGCAGTCACAGCCTCTTCCGGTGTGATACATAAAGTATCCAGACAACCCACAAGAATGTATTCAAGTAATTACCCATTTTCACAGAACAACTGCCCCCTAGTTGTTGGGAGCATATTGTGCCAATAGACCATTTTGAGGGATATAAACAAAAACAGTGGTCCCAGAGTATTTCCTGTTTTACATTTTTAATTTTTATAGCTTCCGAGAATTCAAAAACAGCCACTTATTGATAAAGAACGTTACGAGAGCTGTTTCAACATGAAGTTATGATTGAATTGTCTCTTGTTACTGTTATGAAATAGCTTGATAACATGCAGGAAATGTCCATGAGCCAATGATATGACCACATTGAAATGGTCTTTTCAGTTGTGTGGTAAATTTCATTGTTTTGTGCACTACTGGGTAACTGTAGGTCAGAGTTAATGAGGATTAGGTTTAGCTGGATGTAATTATGCATAATTTATTGTAATTACTTCATGTTGTAACAAGGACAGCGTTAAAAACAAGTATTAGCAAAACATTTGTACCATGTAATGTTGATTAACTACACATATTAACTCATTTGAAACCATCATCTGTAATAATATGTTAACAAGTAAATAGAAATCAAATAAACGTTCTCTCTGACTTCTTTTTCCTCGCAG
Seq C2 exon
TTGCCTGCTCCGAATTCAGGAGCCATAGATATGAGTTTGCAGACGCCTTCAGACGTGAAGGTGAAGGAGGAGGACCCTGTGGAGGTGGACTCCACTCCGCCTACAAGTCCTGACTCCATCTCCAGCATGTCAGACAGCAGCAAAGAACCCGTAGGCAGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298:ENSDART00000013563:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]