RnoINT0022346 @ rn6
Intron Retention
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144151113-144158671:-
Coord C1 exon
chr7:144158547-144158671
Coord A exon
chr7:144151251-144158546
Coord C2 exon
chr7:144151113-144151250
Length
7296 bp
Sequences
Splice sites
5' ss Seq
AGTGTGACT
5' ss Score
-0.25
3' ss Seq
TTACTCTTTTTTCCTAACAGAGT
3' ss Score
10.94
Exon sequences
Seq C1 exon
ATCAAACACCTACTCCAACAAGATTCCTGAAGAACTGTGAGGAGGTGGGGCTCTTCAATGAATTAGCTAGTTCCTTTGAACATGAATTTAAGAAAGCTTCTGATGATGATGAAAAAAAGGCAAGT
Seq A exon
GTGACTGAAAAGACTTAGGGTGTCGTTGTGCCTTGGAAGAGTTCTAACCATGTCAGTAATCCTAGTCACTGCTCCAGGTCTTTTAGGGGCAATAGAGAGACAGGTCTCACCATTTAACTGGAATAGCCTTGTGTCACTATGTTGCCCAGGCTGACCTCAAGCCCATAATGATGCCCTTGCTTCATCATACTGAGGCCTGGGATGACAAGCATGTGCTACATCTTACCTCCTACCATTAGGTAGAGATCTAGCTGATGGACCAGCAAAGGTCAAAGGTCTATTCTTACCAGAACACGAATGTTCCTACCCTCCAGTAAGTCATTAGTTAATATGTTTTAATCAGTTTCTCTGTAGGTGTGGTATATAGTAGTATATGTATGTGCCTGTGTCTGTGTACATGTATGGAGACCAGAGATGTAAACTGATTGTCTTTCTTATCTCTCTTCACCTTATATTTTGAGGCAGGGTCCCTCACCAAACCTAGAGCTCATCCATTCAGTTAGGCTTGCTGGCTAATGAGCTCCAGGGACCTGAGGGTCTCTGACCTCACCAGACCACTGGAGACACACATACGTGCTCTGCTTTTAGATGGGTACTGGGGGTCTTTACTCAGGTCATTGGGTACTTTTTTGGCCATTCCCTTAGCAATAATCTGTTGTTTCCCTTGTGAATATGTTGAAGTTATTAAAAGAATATGACTTGGAGGACTAAAGAGAGATGACTCAGTGGTTGAAAGTGCTTGTTGCTCCTAGAGAGGGCCCAACTTCAGTTCCCAATACCCATGCTCACAGCTCACAACATTCCAGAAACTGATACACACTCTGGCCTCCTCCGGCACCAATATACACATGTTGTACATATAAATAATAATAAAAAAAATGAAGAATATGAATTGGAACATTGAGGCAGAGGATTACAGTAGATTCAAGGTCAGACTGAGCTAAATAGTAAATTCCAGGTAAGTTGAGCTACAGAGTGAGACACTGATTCAAACAACCAAACAAAAGTATGAAACGTTCAGATTTTAGTGGGTAACTCTTTTTCCCGATATCCTGAGGGGTGCTAGAGATACAACTTAGTGGTAGGTGCTAGCAGACAAAGGGCCTGAGCCGCCACCACCACCCCCCCCAAAAAAAAACAAAAGAACAAATCCCACTGTTTATAAACTGACTGCTTAGACAATTTTTTATTTATTTACTTAATTTTTATTTATTTATTCATTACTTTTTTGAAAAAGGGTCTCACTGCTATGTAGCCCTGTCTAGCCTCAAATTCATAGATATCTACCTGCCTCTGCTTCCTAAGTGCTGAGATTCTAGACTCCTTTGGGTTATTTTTATTCAGTCATCCATCCAACAGATGTGTTCAATTTCCTCTCTTTTTTGTTTCAATGTGTGTGGTTTTTGCATTCAAGTAACTTCCTAGTGCTGCTTGATTACACCTAGGGAAACGTTCCCAGCCTTCCCAATGGTGTGACCCCTAATACAGCTTCTCATGTTGTAGAACTCTCAACCATAAAATTATTTCTGTTGCTAATGTATAACTATAATTTTACTACTATAGTGAACCGTAATATAAATACCTGATGTGCAGAATATCTGATATGCTACCCCTGTGAAAGGGTTATTCCAATTTCCCCAAAGGGATGTGCACCCAAATTGTTTAGCTAAGTAAGCGTGATGGTACACATCTGTGTTTGCCACACTTAAGAGGCTGAGGCAGGATGATCACCCCATGTTTGTGACTCAGTCTTGAGGTAAAATAAGGTTATTCTTACTACCTTACAAAGGAGATCAACCTGGATGATGAAAGAAATTATGTCACTTTGGGAATATTTCAAGAAATTGAGAATTTTTTTTTTTTTAGAATAAAGATTTAATATGAATAAAAGTGCACCCTTGAAATGTGTCAAGGGTTTTTATATAAAAGAGGGATTATATGCCAGACATGGTTGTGCATAGTTGTAATCTCAAACTCAGCAAGCTGAGGCAGGAATATCTTGTTTGGTTACATACCAAGTTCCAAGCTACATGGTAAGACTCTGTTTCAAGCAGCCCAGCCTGAATTCAGGTCTTTAATCCCAGCACTCAGGAGGCAGGGGCAGACTGATTTCTTTGATTTTTAAGGCCAGCCTAGTCTACAGAGTAAGTTCCAAGACAGCCAGAGCTACACAGTGAAATCCTTTCTAGAGAGTAGGGGGATCAGCCCTGCCTGCAATCCCAGCATGCAGGAGTAAAGGCAAGGGTATCAGAACTTGAAAGTCATCTTTGGCTATATACCAAATTCAGGGCTAGCCTGGGCTACATGAGACAGTCTTAAAACAAATGTGTTAAGTTTAGAGAGCTGGAGAAATGGCTCAGTGATTAAAAGCACTTGCTATACTCTCAGAGGACCCAAGTTTATTTCCCAGAACTTACCACCATCTGTAACTCCACTTTCATGGGATCCAGAGCCTCTTCTAACTTCCTCAGGTTCCTATACCCACATGGTACAGATACACATACTGAGACACGTACACATGTGAAGAAAAAAAGAAGAAAATATTAATTTTATTCTTTGTGTTCCAAAGACTGAAGCAAAATAACTGTGTAGAAGATACCACAATGTTCAGGTACATGAACGCACTAGTAAAGATGCCGTCGTAAAGACTGAAATGTTGAGGTTCTTTCTCATCCTAAGATACTGTGACACTTGTTTTAACTTTTTTTTTTCCTTTTTCTTTTTTTTTTTTTTTCCTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCTAGGGCCTTGCGCTTCCTATGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGTTTTAACTTTTGTATGTGCTAGATTCCCAGAGGATCTCTTCATTTGGAAGACTGGATGTTAATTTTGAAAAAGCAAAATCAAAAGAAAGTGATCCCAGTGGACTAATGTGACTGTAGGAGAAAAAAATATGGAAAGATCAAATTGGGTGTGGTAGTGTCCCCTGTAGCACTTATGAGGCAGAAGCAAGAGGCCAGTCTGGATTATACAGCTAGACCCTCTCCAAAGTATTCAGGGGAGAGGGGAGATGAGTTTACTCTAGAGTTAGAATTCAAGGTAATTAGCCACTTGTTAAAGTCAGGATGTGGAGGCTAGAGAGATGACTCTTCCAGAGAAGCCAACTTCAGTTCCAAGAACCCATGTTAGACAGCTTACCTGTAACTCCAGCTCTAGAAGATCCAGTCCCTTTACCCTCCACAGATACCCACAGACATGTGCACACATAAAGACACACAGAAATCCACACAAAGACACACATAGACATATTTAAAATAATAGATCCTTAAAGTCAGGTCTGCAGTTGCGTCATACTTCAGAAAAGATTCCAGTTGTCTGTACAACAGGATGTACATATTAACATGTGCTCTCCTCACAGTTGTTAGTGAGGATTCAATACATGTGGAAAATTTCCACAAGAGCAGGTAAATTAGCATATTTAGAATTACTGTTACCATTCAATTTAAATTGTATTTTTTTTTCTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGACTGAGCTAGATCCCCAACCCCCAATTTAAATTGTAAAAGTGTAAGATAAAGTATCAGTGGGATTTTCTTCAAAGTTCATAGCTATCTATGAGCTTCTTTTTCATGTTGTCTCCCTGCATGTGTCACGTATGCATGGGTGCATTCATCCATGTAAGTGTATACAGAGTTCATACAGAGACTAGAGGTTGACTGGGATGTCTTTCTCAAGCGCTCATCCATGTTTTGTTTTGAGTTTTAGAGTGTGTGTGACTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATACCCACAGAAGATGGCATCAGATCCCCTGGAGCTAGAGTTAGAGGTAATTGTTAGCTGCCTGATGTGAATGAAACTCAGGTCTTTTACAAGAGCAGCAAATGTTAACTGCTAAGCCATCTCTCCAGCACCTTCATCTTATTTTTTTGATACAGGATCTAAAACTGAACCTGGTGTTTGCATTTTGAGCTAGAGTAGTTGGCTAGCAAGTCTCCAGGATCTTCCGATCTCTACCCACTAGAGTTGTGCTGGGATTACCAATTCCTGCTGCCATGATTAGCCTTTGGGTATTGGACTGTCAAAATCAGTTCTTTTGACTTTTTTTTTTTTTTTCCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTTTAAGATTTATTTATTTCATGTATATGAATACACTGTTCAGACACCTTGGAAGAGGGCATTGGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCAGTTCTTTTGACTTTTACGGAAAGCCTTTAACTCCTGACCCATCCTCCGAGCCCCAACTCACTTTTGAAATCAGGAAACTCAGTAGCATGTGTTTGTGTTTCTTTGGGACTGATGTTCTGTTCATGAAATAAGTCTTCCTATATAGTCCTGACTGGCCTCGAACTCACTGAATAACTCAGGCTAGTCTTAAACTTGAGGTAATTTGCTTACCATACATATTTTTTTTTCTTTTTTTCAGAGCTGGGGACTGAACCCAGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTATTTTATTTTTTATGTTTGTGTCTTCAAGTGTGTGTACATGTTTGTGAGTGTATGTATGTGTGTGTGAGTATGTGTCTGTGTGTGTACATGCGTGTGAGTATGTGTCTATGTGTACATGTGTGTATTTGTGTCTATGTGGTGTGTGTGTATGTATATGTATGTGTATGTATGTGTGTATATGTGTGTGTGCACATGCACATGTACAGGAATTCATATGCATGCATATGTACATGTCATGGCCTATATGTGGAAGTCCAGACAGGAGTCACTTCTATGTATGGGTTTTGGGGAACTGACCTCTTGTCATCAAGCTTGTTCCTTTTATACACTAAGTCTTCTCCATGACCCACAACCTCTTTTTGTTACTGTTTTGAGAGAGGTACTTGCTATGTAGCCCAGGCTGGCCTGGAACTCTGTATCTAGCCTAAGCTATCCTCAAGTTCTTTTATATGTCAGCCTTCCAAGTGCTGGAAGTGCAGTTATGCACCACCATGCCAGGATGGCAAATTCTGTAAAGCAAATTCAACAAAAGTAGCTTTCCTGGGCAGGCAAGATGCAGCGAAAGACACTTGCCACCAAACTGACAATCCAAGTCTGATCTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTTTACCACTGAGCTAAATCCCCAGCCCCCCAAGTCTGATCTTAGGCCCACACAGTGAAAGGATAACTGGAGCTAAAGAGTCAACTCACCAGGTAAGAGCATTTGCTGCTCTTTTTATGCCCTTGATTTGATTCCTAGTCCCATTGGGGAGCTTACAACCACCTGTAACTCCAGTTTCAGGGGATCTAACACCCTCCAGGTAACTCTTTGGCACCAGGCAGACAAGTGATGCACACATGCAGGCAAACATCCTTACATAAAATAAAAATCTCAAAATAAGAAACAAAGGAGAGAACTGACTTTCAAAAGTTATCCTTCATCCTTCATATGTACTCCATAGCATACGTTTGATCACATGTATGTACATATACAAAATAAGTAAGGTGAATATATAGAATAAAAAATTTTTGAAGTTTCCTGCTTTTTGCAACTTTACCTTTCCAATCTTTTAGCTCACTTGACACTTGTGGAGCTAGTTCATGGTTGGTCAGGCCATTCTTTCCTTAGGGGGGATTCTTTGATGTTTCTGTCTGTCTGTCCAGTAGTGGTCTTTTCTTCCCACCACTGCACAGATGTAGTGGACTGTTGTCTCCAGGGGTATTTAATGAACCTGAAGCTTTCCTGAGCCACAGCTTTTATAGGCGAGATTCTAAAGGGGATTTGTTTTTTTCATAGAGACCTCTCTTCCCATCAATGTGTTGTCTTCAGAGATCTCAGAATTTAGAGCTAAATTGGCTCTGACATATTAGCATTGTAGAAAAACTGAGACAGAAATTAAGATTCTTTGATGTTTCTTACCCTTGTGAGATGGAACAGATCATTACTACCTCTTTAGTACAGTGCAGTACACTGAATTAGTTTGCTGCTCAGGCTTCCAGAGATTAAGGTAGCAAGTGATGGTGCACATCTATCATCCTAGCACTTGAGACATGAAGGCAAAAAGATCATGAGTTCAAGACCAGCCTAAGCAACATAGTTGAGACCATGTCTGGTGTTGGGAGAAGAGCAAAAGAAGTAGTAGGAAGAAACTCACCTTTCATCAAGAGCCTAGAATATAGGAAGAAAAGAACAAAGGATCCATTTTGACATGAAATTGAGCTGCCAGGCCAACCCTCTTGTCATGGTGTGGTGTCAGGGTTGCTGTCTCAGATGGTTTACTATTCCCCGCAAAGCTATTTACAGCTCTAGTTGGTCAGGTAGTTACACTTCTGCCAGGAAAGTTCTTTACTTCTAGTTTCTTCAGTACTACCTCTAAGACCAAGTTCTAATTTCTTTTATTGATGGGATGATCGCCCCTTCTTTGTTATCCCCAAATCTTGTCCCTGGAGTTTCTAGCCGTGTGCACTAAACAGACTGTGATCACCGTCTAGCATGGCAAGTTCCCCAGAAAAGATCTTTCTTATTTTGTTTGTAGTACTTTAATCCTTAGTTAATCATCTATTGCTTTTGCTCACTGGGTAACCGAGCATTCTGGTTGGCAGAGGAAGTGTTCACAGCTCTGCAGTGGCCAACAGAGCTGGTTGGGAATTGACTGGTACTTGATTCAGAAGTCCTTTTACTTTGCTGAGAAAAAAATTATATATGTAATATTTGCATAGGTTTAAGTGACATTTATTTTATGTTTTTAGGCACTATAAGTACTTGCTTGTAGCTGATATTACCTTCATTTTGTAGTTAGGGAATAGAAGCTCCAAGAAGATACAGTGACTAGACCAGAGTCTATCTAAATCATGAGTCCATATTTCTGTGGCACTTGCAGTTCAGTGTTTTGTCCAAGGCCTAACTCCGTGAAGCACATGCCCTCATCTAAGCACTAGCATCATGAACCTAAACTCTGTTTACTCTTTTTTCCTAACAG
Seq C2 exon
AGTGCTGCTGGGCCTCTAGACATGTCTCTGCCTTCTACACCAGACATCAAAGTCAAGGAGGAAGAGCCAGTGGAGGTGGACTCATCACCCCCCGACAGTCCTGCTTCCTGCCCCTGCTCCCCGCCACTGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269:ENSRNOT00000020527:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]