HsaINT0013825 @ hg19
Intron Retention
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53931199-53937232:-
Coord C1 exon
chr12:53937081-53937232
Coord A exon
chr12:53931337-53937080
Coord C2 exon
chr12:53931199-53931336
Length
5744 bp
Sequences
Splice sites
5' ss Seq
GTGGTATTC
5' ss Score
0.84
3' ss Seq
TCATTTTTCTTTCACAACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAGGTGGGACTCTTCAATGAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAGGCAAGAAGCAGGACTGTTGCCAAAAAACTGGTG
Seq A exon
GTATTCAGACCTAGGCTATTTTTATTGTGCTTTGGGATAATTTTCTTAATTGGTTAAAACACAAAATCATGGGCTTAGTAGAGTAAAACCAGTAAAACCAGATAGTAGTCACTAATCCCAGTCAGCCATTCAGGTCTTTAGGAGTTCCAGATGATGGATCAGCACAAGTCTGTCGTCACCGAAAATTAGTCCTCTTGTTCTTCCAGGGGAGTATTAGTTTAATAATCGGTTTTTTAAAAAATATTTATATTATAAATATGTTGAAGATGTTAAAAGGTGATAAATTACTCAGATTTTGTTGGATAACATATTTGTTGCCAAATTCCACTCTTTTCTGAGCTGATCAGACTTCTCAGCTACACTGTTTTTTTGAATCAGCAAGTCAATAAACATTTATCAAATTTCCACTCTTCTTTGTTTCAATATATGTGGTTTTTGCCTTTAAGTAGCTTTCTACTATTATTCAAAGCATTAAAGATAAAGAAGGATGTTCCTACTGTCTTTCAAAGGAGATCAACCAGGACGGTGAAAGAACTATAAACTATGTCACTTCGGGAACTTTTAAAGAAATCAAGTGGCCAAGCACATTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTACAGGAGTTCAAGACCAGCCTTGGCAATAGCAGGACCTCCATGTTTACAAAAACAGTTTTAAAGATTGATCAGGCATGGTGGTGCATGCCTGTAGTCCTAGCTACTCGGGAGGCTGAAGCAGGAAGATTGCTTGAACCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTGCACCACTGTGCTCCAGCCTGGGTGACAGAGTGAGACCCTATCTCTCTCTTTTTTTTTTTTTGAGACAAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTTTCCTGCCTCAGCTTTCCGAGTAGCTGGAACTACAGGCGCCCACCACCACACCTGGCTAATTTTTTTTTTATGTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCTCACCTCGGCCTCCCAAAGGGCTGGGATTACAGGCGTAAACCACCACGCCTGGCCCGGAGACCCTATCTCTTAAAAAAAAAAAAAAAAAAACAGGCCAGGCGCAGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGCAAGCAGATCACAAGACCAGCCTGACCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAACTTAGCCAGGCGTGGCGGCGCACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCATTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCAAAAACAAGAAAGAAATTGAGGAAATTTTGGTTGGAAAAGAGATCTAGTGTGAACAAATTGCGATCTTCAAGAGTATTCATTAAAAGAGGGATTACATTTATTCCATGTGGTCTAAAGGGAGAAGTAGGACCACTGGGTGGAAGCTGTCACAAAATATGTTCAATTATATGTAGACCACTTAGTAGAGATATTGTAGAGGGGATTAAAATGCTGGAATCCCTTCTAATCCTGAGGCGCTATGATTCTCTGATTTTAGCCTTTATATAGTTCAGATCCCTAGATAATCCCTTAGTTTGGAAGACGAGAGGAAATACTTGAAGAAGCAGAGTCAAAGGAAGATAGTTCCCATGGAATAAGGGGCTTGGGGGAAAAAGAAAAATGCAAAGATCAAATTTTACTTTAGAATTAGAATTCTAGGTTATTGGTCACTATTTTTAAAATCAAGTCTGTGTTCCTGATTTTCTGGAATCATAAAAGATTCCAACATCTGTATCCCAAAACATATATATAAACACATTAACCTCACAATTGCATGGTATAGTGAAGCATGGGATCCTATCAGAATATAGAATAGCTGGAACCGCTTCTATTTTTCCCTATATTTAAGAAAAAATTTCCATGGGAGCTCTTTCCTTCTAAGAGGGCATACATAGCAGGTAAATCAAGATAGTTATACATGACTTTTCCATCCAGTTTAAGTGGTAAGAAAGCAAGATAGTGTCTTTATCACTGGAGTTATTTCCAAGTTCCATAGATTTCTATGAGTTTCTTTTTATGCTATCTCCCTTAAACTAACAGAAAGAGGGCTGCGCGAGGCCTGGTGGTTCACACCTGTAATCCCAGTGCTTAGGGAGGCCACACAGGAGGATTGCTGGAACTCAGGAGCTCGAGACCAGCCTGAGCAGCATGGTGAGACCTATCTCTACAAAAAATTTAAAAATCAGCTGAGTGTGGTAGCACACGCCTATGATCCTGGCTACTTAGGAGGCTGAGCCTAGGAGGTCAAGGTTGCAGTTAGCCATGATTGAACCACTGCACTCCAGCCTGGGCAGTGGAACAACACCCTGTCTTTATTTATTTTATTTTATTATTATTTATTATTATTATTTTTTTGAGACAGAGTCTCCCTCTGTCACCCTGGCTGGAGTGCAGTAGCGCAATCTCGGCTTACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGATTACAGGTGCATGCCACGACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCAATCTGTCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCTGGCCCAGACCCTGTCTTTAAATAAATTAATAAAGCAGGGAAACTCAGTAGCACATATTTGTAGTTCTACTTTTTTTTCTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCATCCAGGTGGAGTGCAGTGGTGCGATCATGATGGCTCACTGCAACCTCCACCTCCTGAGTTCAAGTGATTATCCTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGTCCATGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCTGGCTGGTCTCGAACTCTTGACCTCATGATCCACCCACCTCAGCTTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGTGCCTGGCCTCGTATTTTTTTTGAGACAGAGCCTCACTCTGCTGCCCAGGCTAGAGTGCAATGGTGCTTGCAACCTCAAACTCCCAGGCTCAAGTGATCCTCCCGCCTCAGTCCCTGGAGTAACTAGGACTACAGGCACTCACCACCACACCCAGCTAATTTTTGCATTTATTTTTAGAGATGGGGTTTTGCCATGTTGCCCACACTGGTCTTGAACTCCAGGGCTCAAGAGATCCACTAGCCTCAGCTTCCCAAAGTGCTGAGATAACAAGCGTGAGCCACCACACCTGGTCTTGTAGTTCTGCTTTCAAATGGCAGAACTAGCCACAGTCTTTTTGTCATTTTTTTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTGACAGGATCTTGCTCTGTCTCCCAGGCTAGAGTGCATTGGTAGAATCTTGGCTCACTGCAGCCTCCACCTCCTGAGCTTAACCAGTTCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGTACCACCATGCCTGACTAATTTATTTTCATAGAGACAGGGTCTCACTATGTTGCACAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTCCCACCTCGAATTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCACACCTGTCCAAGAAAGGGTTTTGCTATTTGCACAGGCTGGTCTAGAATTTCGGGCCTCAGGTGATCCTCCCACCTTGGCCTCCCAAAGTGTTGAGATTACAGGCATGAGCCACCACACTTGGCCTATGAGGGATTTTATACCCAATTTATTATAGGCAAATTCAAGAAAATTAGCTTCCCATAAAAAGCTTCAAGTCTTTTTCATTGCCATTTTAGCTCAGTTGACACTTCTGGGAGACTAGTTTATAGTCAGCCCTTTCCTCACTGGGCATTCCTTGGTGTATCCTCCTGCCTGTACAGGAGTGGTCTTTACTTCCCCTTAATGAGAAGTACAGGCTCAGTGGAAGAGTCTCCAGAAGTGTTTAATGAGTGTGGAACTTTGCTGAACCGCAGCTTTGCTAGGAGATGCCCTAGAGGATTTCAAATCTATGGTTGTATTTACTTAGAGGCTTCTCCTTCCCACTAGTCTCTGACTTAAGAGATCTCAGAATTAGCTAAATTGGACCTGACATCTTAGCTATGTAGAAAAAATGAGGCAGAAATGAAGCTACTTTTGCTGTTGCTCACCCTCCTCAGATTGGGGAAAATGAACCACTACTACCTTCTCTAATGTAGTAGATATCACATTATCTTTAATTTACTCAGCTAGCTATCAAGAAGGTTTCTAAGGGTTAGGGTAGCAAGGGAAGATCTTGAAACAAGCAGTTGCTTCACCAAGAAGCCTGGGATACAGGATAGATAGAACAAAGGATCCACTTTGTTATGAAACTGAACTGCAATGCCAACCCTCCTATCCTGGTTCAGTGTCAAGGCCATTATCTCAGATGGTTTATTGTTCCCTGCAAGGCCGTTTACAGCTCCACAGTTCTGTGAGGTGATTGCATCACTGCCAGGAAAGTGCTCTCTTTCCTTTCTGGTTTTCTCCAGTCTTGCTCCTAAGACCAAGTTGTCATTTATTTCACCAATCAGATGATCAGCCTTTCTTTTCTGTTACCCCAAACCCCTTGTCTACCTGATACATCCAGCACCATATTTTGGGGTGAGATCACCATCAAGCATGGTGAGTTCCCCAGAAAATACCTTTCCTATCTGGTTTGCAGTACTTGAATAGCCAGTTTGTCTTTGTTTGCTTTTGGTAATTGGGTAATCCTTGTTGGCAGAGAAAGTGTTCACAGCTCTCCAGTGGCCAGCAGATTCAGGAATTATTTTGATTTCCTGAAAAATATTATCATAATATTTGCATGGATTTAAATGGCATCTTTTTTTTCAGGTCTTTATAAATATTTGTTTACCATTGGTGAAGCAGGTATTATCTTCATCTTATAGTTGGGGAAACAGAAGCCCTGAGAATTACCGACAAAATGATTTGGCCAGAATTGTACATAAAACATAAGGGGCCCATATTTCTTGGCCGGATGCAGTGGCTCATTCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGTGAATCACCTGAGGTCGGGAGTTCGAGATCAGCCTGACCAACATGGAGAAACCCCATCTCTATTAAAAATAAAAAATTAGCTGGGCGTGGTGGCACATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATCTCTTGAACTTGGGAGGTGGAAGTTGCAGTGAGACGAGATCACACCATTGCACTCTAGCCTGGGCAACAAGATTGAAACTACGCCTCAAAATACAAAACAAATCAAACATAAGGGGCCCACATTTATTTGACATGCAGTTCAGTGCATTGTATAAGAGCAGAACTTCTTAGAAGCATATTCCCTTATCTTGGAAATGGGAAAATATAGATTCAACCTGAAAGGAATCATAGGGTTAAACTCTGTTCATTTTTCTTTCACAACAG
Seq C2 exon
GCTGCTGCTGGGCCCCTTGACATGTCTCTGCCTTCCACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAGGTAGACTCATCCCCACCTGATAGCCCTGCCTCTAGTCCCTGTTCCCCACCACTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-ATF7:NM_001130059:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)