BtaINT0022543 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26650694-26655050:+
Coord C1 exon
chr5:26650694-26650812
Coord A exon
chr5:26650813-26654975
Coord C2 exon
chr5:26654976-26655050
Length
4163 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
TCATTTCTCTCTTTTAACAGGCT
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATCAAACTCCTACTCCAACTCGATTCCTGAAGAACTGTGAAGAGGTGGGACTCTTCAATGAACTAGCTAACTCCTTTGAACATGAATTCAAAAAAGCTGCAGATGAAGATGAAAAAAAG
Seq A exon
GCAAGAGGCGGGACTTTTGCTAAAAAACTGGTGGTGTTCAGATCTAGGCAACTTGCACTGTGCCCTGGGATAATTTGCATAATTGGTTAAAGCAACAAATTATGGGCTTGGTTCTATAGAACCAGATAATACTCACTTATCCTTGTCAGCCATTCAAGTCTTTAGGGTGTCCAGGTGATGGATAAGCACAAGTGTTGGGTCTTCATCAAAAACCAGTTTTCTTGCCCTTCTAGTGGACGTTGTTCAGTAATCTATTTTTTAAACTATTTTTGTTCTGGATATGTTACTCAAATTTTGTTATATAATGGTTTTTTTTTTTTTTTGCCAAATCCCACTCTTTTCTGCGCTAATCAGACTTCTCACTTGGATTGTTTTATTCAGTCAGCCAATCAGTAGACATTTACTGAATTTTGACTCTTCTTTGTTTCAGTGTATGTAACTCCTACCTCCGAGTAACTCTGTAGTAATAGTCAAGACATTAAGCTTAAGGAAGGATGTTCTTAAAAACCTTTCAAAGGAGATCAGCCAGGATGGTGAAAGAATCAGAAATTAGGTCACTTTGGGAACATTTAAAGAAACCGCTTTTTTTTTTTTTTCCTGCATACACATTTTATTGCATAGAAAGGATCATACTTGTCTCCTGTTTTATTTTCTTATTTTGATTTGGCCACACCCAGTGCCATTGGGGGAGAAGGCAATGGCAACCCATCCAGTACTCTCGGCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTTCATGGGGTCACTAAAAGTCGGACACGACTGAGTGACTTCACCTTCACTTTCCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCTGCAGCAGCAGCAGTGGCATTGGGATCTTAGTTCACCAACCAAGAATCAAACTCATGCCCCCTGCAGTGGGAATATGGAGTCTTAACCCCTGAACCACCAGGGAAGTGTGAAAAGAAATTTTATTGAAACAAAATTGCAGTCTTCAAATAGTTGAAGAGTTTTTGTGTAAGAGAGGGGTTAAACTTACTCTCTGTGGCCTAGAAGTAGAAATAGGATCAGGATAGGAAGCTATCACAAGGTATGTCCAATTATATGGAGGTCTCTTAGGATAGATATTGTGGAGAGGATTAAAATACTGGAATCACTTCAGATTCTGAGATGCTGTGATCCTGATTTTAACCTTTATATTCAAGATCCCTAGAGAATCCTTTAGTTTGGAAGATCAGAGGAAATAGTTCAAGAAGCAGAGTCAAAGAAAAATAGTTCCCATGGAATAAGGGGTTTGGGGGCAAAAGAAAAAGTTAAAGTTTACTCTATTTTAGAATTATAATTCTGGGTTATTAGTCACTACTTAAAATCAGGTATCTTTTCCATAATAATTCAGAAAAAATTCCAATATCTCTATCTCAGAACATACACATTAACACGTGTACCTCCCATAATTGCAGGGTGCAGTGAGGCATGGAATCTTACCAGAATACAGGAAAGTCAAGACTTAAGAAAAAATTTCCAGGGAGGACTCTTCCCCTCTAAGAGGGAGATAGCAGTGAGAGAGCTTATTCTTAGGTATGTTGATAAGGAGACCAGGGCCCTTGGAAAGCTCTGAGTTGTTATGGCAACAATCTGTTTCTACTGAGACCAACTTTAAGTCCAGAGCTAAGGATTACACAACAGAACAGCACATCTTGCTCAATGGTGTGTTTTTCCTTAAGCTCTGTATATAGTATATAATTATTATATAACAACAATGTATCTCGGAGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCCTCTATGGGGTCGCACAGAGTTGACTGGACTGAATTGACTTAGCAGCAGCAGCAACAATGTATCTTTCTTGGAGACATGCTTCCCATTAACAGAAACCTTCTGACTAATCCTATTATTTTAAGATTATGTTGTCCCAGTGGGTCTGATAAGACCTTTACAACCTTAAGATACTCTTTTGATCTATTGATGGTACCAACTGAAAAAGTATATAAAGCCCCACCCGAACTAGTGATTGGGGCACTCATTGCCCACTTCTGATGTCTATGTCAGAAGCTGTCTCTTTTCACTGTAATAAAACTTCTGCTACACAAAACTCTGAGTGATCAAGCCTTGTCTCTGGCCCCAGATCGAAATTCTCTCCTCTCGAGGCCACAAATCCAACACCATTCACTATAAGCTATCAGCAGGTAAATCAAAAGAGTTTGTGCACAATTTTTCCATCCATCTTAAATTATAAGAATGAAGTGTTCCTATCACTGGGGGTCCTTCCAAGTTCTATAGCTTTCTGTCATCTTCATTTCCTGTTATCTCCCACATATTAAAAGAAAGTGGGGGGAAACTCAGTGGCATATATTTGTAGTTCTCCTTTCAAATGGCAGAACTTGTGGTGGTCTGTTCGTCATTCTTTTTATCAGTCACTTGCTTACAATCTATGTGGTATAATTTTATTTTACAGTTTCTCTACTTTATCCCCCCTGTCATTTCTTCCTCGCCCCAAAGAAATCAGTCAAATTGTTTCCACCAGGTTGTGAAGGATTTTAAACCAAACTCATTATAGGGAAATTCAAGAAAATTAGCCTCCTTTTAAAGGCTCCAAGTCTTTTCCACTGCCCTTTTAGCTCAGTTGACACAGTCAGTCATGCCTTTACTCACTGGGCATCTCTTGGTGTTTCTCCCTGCTTGGTCAGGAGTGGTCTTCACCTCTTCTTGATGAGAAGCATAGGCTCAGTGGAAAATTATCTCCAGGAGTGTTTTATGAGCCCAAAACTTCTCTGAACCACAACTTTTCTAGGAGATGCCTCTAGGAGATTTTAAACTTGTGGTTGTATTTACTTAAGAGGCCTCTCCTTCCCACCACCCTCTGACTTCAGGGATCCAGGAATTAGCCCACTTGGACCTGACATCTGTGTAGAAAAAAATGAGGGCAGAAATTGAAACCATCTTTGCTGTTGCTCATCCTTATCAGATTGGAGAGAAAGAACCATTACCACCTTCTCTAATGTAGTAGATACCAGATTATCTTCAATTCACTCAAATACCAGGATTTCTAGTGATTAAAATAGCAAGGGATAAATTAAAAACAAGCTCCTCTTTCACCAAGAAGCCTAGGATGTGGGAAGAATAGAACCAAGAATCCACTTTGTCATGAAACTGAACTGCAATGCCAGCCTCCCTGTTGTGCAGTATCAGGGTCATCTTAGATGGTTTATTGTTCTCTTCAAAGCCACTTATGGCTTCCCAGTTCTGTGAGGTGATTGCACCACTGCCAGAAGAGTACTCTTTCCCTTCTAGTTTTCTCCAGTCCTGCCCCTAGTCCCAAGTTCTAGTTTCTTTGACTGATCAAATGATCAGCCTTTCCTTTCTTTGTTACCCCAAAACCCTATCTTCCTAGCTTCTAGCATCTAGCATCAGATTTGGGGGTGAGAACACCATCAAGCATGGAGAGTTCCCCAGAAAAGATATTTCCTCTTTCATTGACAGTACTTTAATAGCCAACTTTTTTTTGTTTGCTTTTGATAATTGGGTAACCTAGTCATTCTGATTGGCAGAAAAAGTGTTCACAGCTCTCTAGTAGCCAGTGGAGCTGGTTGAGAATAGGAACGCACTGGATTCAGAAATTGTTGTGCTTTCCTAAAAAATAATCATAGAATGTGATGAATAAATGACATCTTTTTTTTATTTTCTCCTTTCAGGGTCTTCATAGGCATTTAAAGGTTTTTTTCCCCTCCTTTCAGAATCTTTATCAGTGTTCATCCATGGTGAGGCAGGTGTAAATAACTTCATTTTATAGTTGGGAAACAGAAGCCCTGAGAAGTTAAACGATTTGGCCACAGTTGTGTGTAAAACCTGGGTTCCACATTTCTTTGACTTTCAGTTTGGTGCTTTGACCAAGGATTGAACTTCTTAGAAGTATATTCACTCATCTTTTAACTGGGAAGATATAGATTAAACCTGAAGGGAATCATGGGATTGAACTGTGCTCATTTCTCTCTTTTAACAG
Seq C2 exon
GCTGCTTCTGGGCCCCTTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863:ENSBTAT00000007704:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]