MmuINT0020287 @ mm10
Intron Retention
Gene
ENSMUSG00000099083 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102553784-102557578:-
Coord C1 exon
chr15:102557460-102557578
Coord A exon
chr15:102553922-102557459
Coord C2 exon
chr15:102553784-102553921
Length
3538 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTTCTCTTTTTTCCTAACAGGGT
3' ss Score
12.54
Exon sequences
Seq C1 exon
ATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAAGTGGGGCTCTTCAATGAACTAGCTAGCTCCTTTGAACATGAATTTAAGAAAGCTTCTGATGACGATGAGAAAAAG
Seq A exon
GCAAGTATGGCTGAAGAGACTTGGGGTGTCCTCATTATGCCTAGGAAGAGCTCCAGCCATATCAGTGAAGAGGTCTCACCATTTACCTGGACTAGCCTTGTGTCACTATGTAGCCCAGGCTGACCTCAAGCCCATGGTGATCCCCTTGCTTCATTACACTGAGGCCTGGGATGACAAGCATGTGCCACATCTTACCTGCCATTAGGTAGAGTTCTAGTTGGTGGACCAGCAAAGGTCTGTCTTCACCAGAACACAAATGTTCCTACCCTCCAGTAAGTCATTAGTTAATATATTTTGATTAATTTCTCTGTGGGTGTGGTATATGTATGTATCTGTGTACTCATGTATATGGAGACCAGAGATCTAAACTGAATGTCTTCCTTGTCTCTGTCCACCTTATATTTTGAGGCAAGGTCCCTCAACAAATCTAGAGCTCATTTATTCAGTTAGGCTTGCTGGCTAATGAGCTCCGGGGATCTGAGAATCTCTGATCTCACCAGACTACTGGAAACATTAGATGCTCTGCTTTTATACGGGTGCTGGGGTCTTCACTCGGATTATCAGTACTTTTCTGGCAGTTCCCTTAATAATAATCTATTTGCTTCCCTTGTGAATATGTTGAAGTTATTAAAAGAATATGATTTGGGGGATAGAGAGATGACTCCGAGGTTAAAACTGGTTGTTGCTCTTCAGTTCCTAGTACCCATGCTGGCAGCTCACAACCACTCCAGGAGTTTTGACACACACTTCTGGCCTCCTCTAGCACTAATATACACATGTTGTACATGTAAATAATAATAAAAAATTTGAAGAATATGAGTTGGGGCATTGAGGGAGGGGGTTACAGTCAATTCAAGGTCAGACTGAGCTAAATAGTAAATTCAGGTGAGTTGAGCTAGAGAGTGAGACACTGATTCAAACAACCAAACAAAAGTATGAATTGCTCAGATTTTTATTAGGTAACTTTTTTTTTTTTTTCAAATTTCCTTTGAGGGTACTCAGTGTTAGGGTGTTAACAAATGAAGGACCTGAGCCCACCACCACCCCCAATTAAGAAGCAAAGAAACAAGTTCCGCTGTTTGTTTTTGTTTTTCCGAGACAGGGTTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCCACTGCCCTGCTAGTTCCACTGTTTATAAATTGATGGCTTGGAGAAATTTTTTTAGTTATTTACCGTTTGTTTGTTTGTTTGTTTAGAAAGGGTCTCACTGCTATGTAGCCCTGTCTAGCCTCAAACTCATAGACATCTACCTGCCTCTGCTTCCTAAGTGCTGGGATTCTAGACGCCTTTGGGTTATTTTTATTCAGTTATCCAGACAACAGATGTGTTGAATTTCCTCTCTTTTTTGTTTCAATGTGTGTGATTTTGTGTTTAAGTAGCATCCTAGTGCTGCTTGATAATACCTAGGGCAGTGGTTCCCAACCTTCTTAATTATGTGACCCTTTAATACAATTCCTTGTGTTGTGGGGACCCTCAACCATACATTTATTTTTGTTGCTACTTCATAACTGTAGTTTTGCTACTGTTATGAATCATACAGTGAAAACCTGATGTGCAGGATGTCTGATAGGCTACTCCTTCCTGTGAAAGGGTTATTTCAGCCTCCCCATCTGTATTTGCCACACTTAAGAGGCTGAGGCAGGATGGTTACCACATGTTTGTGACTCAGTCTCAAAATAAAATGAGGTTATTCTTACTACCTTACACAGGAGATCAACCTGCATGATGAAAGATGTCACTTTAGAAACATTTCAAGAAATTGAGAAAGTTTTTGCTTAGAATAAAGATTTAGTATGAATAAAGTACACTCTTGAAATACGTCAAGGGGTTTTTATGTAAAGGAGGGATTCCATGCCAGGAATCGTACACAGTTGTAATCCTAGAACTCAGTAAACTGAGGCAGAAATGTCTTAAGTTTGGCTACCTAGGCTATGTGGTAAGACTGTTTCAAGCAGCCTGGCTTGAATGCATGCCTTTAATCCCAGCACTCAGAAAGCAGAGACAGACTGATTTCTTTGATTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGGTGGCCTCGAACTCAGAAATTCGCCTGCCACGCCCTGCTGATTTCTTTGATTTTTAAGGCCAGCCTAGTCTACAGAGTAAGTTCCAGGACAATCAAGGCCACACTGTGAAATCCTTTCTAGAGAATGGGGGGAACCAATCCTGTTTGTTGATTTTATTTTTTTTGTCTTGTTTTGAGGAAGGGGAATTTAGAGCTGGCTTAGTTGGTTAAGTGCTCGCTTAGCACACACATCCCTGCAAACTGGGCATGGCTGCAATCCCACCACGCAGGAGTAGAGGCAAGGGGATCAGAACTTCAAAGTCATCCTTAGCTGTATACCAATTCAAGGATAGCCTGGGCTACATGAGACTGTCTTAAAACAAATATGTTAAGTTTAGAGAGCTGGAGAGATGGCTGAGTGGTTAAGAGCACTTGCTGCACTCCCAGAGGTCTCAGGTTCATTTCCCAGAGCTCACAACCATCTGTAACTCCACTTCCATGGGATCCAGAGCCTCTTCTAACTTCCTCAGGTTCCTGTACCCACTTGGTACATATACACATACTCAGACATGTACACATGTGAAGAAAAAAAGAAAAACAAGAAAACATTAATTTTATTCTTTGTGGCCCAAAGACAGAAGCAAAATAACTGTAGAAGATAACACAGTGTTCAGATGCATGAACATACTTAGTAAAGACACTGTAGTAGGAACTGAAATGTTGGGGCTCTTTCTCATCCTAAGATACTGTGACACTAGTTTTAACTTTTATATGTGCTAGATTCCCAGAGAATCTCAACATTTGAAAGACTAGATGTTAGTTTTGAAAATACAAAATCAAACGAAAGTGATCCCAGTGGAAGTTTCCTGCCTTTCGCAGCTTTATCTTTCCTATCTTTTAGCTCACTTGACACGTTTGGAGCCAGTTCATAGTTGGTCAGGCCTTTCTCTCCTTAGTGGGGATCCTTTGGTGTTTCTGTCTGTCTATCCAATGGTGGTCTTTTTCTTCTACCACTGCACAGATGTAGTGGACTATTTGTCTCCAGGGGTATTTAATGAACCTGAGCTTTCCTAAGCCACAGCTTTTGTAGGTGAGACCCCTTGGGAATTCTATAGGGGACTTGTTTTGTTCATAGAAGCCTCTCTTCCCATCAACATCAGAGATCTCAGAATTTAGAGCTGAATTGGCTCTGACATATTAGCAGTGTAGAAAAAGTGAGATAGAAATTAAGATCCTTTGGTGTTTCTTACCCCTGTGAGAGGGAACAGGATCATTGCTACCTTTAGTACAGTACTGAATTGGTTTGTTGTTCAGGCTTCCAGAGGGTCAGGTAGCAAGTGATGGTGCACATGCCTTCATCTAAGCACTAACATAGTGAAACTAAACTCTGTTTTCTCTTTTTTCCTAACAG
Seq C2 exon
GGTGCTGCTGGGCCTCTTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAGGAAGAAGAGCCAGTGGAAGTAGACTCATCGCCCCCTGACAGTCCTGCTTCTAGCCCCTGTTCCCCACCACTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099083:ENSMUST00000108828:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types