HsaINT0013825 @ hg38
Intron Retention
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr12:53537415-53543448:-
Coord C1 exon
chr12:53543330-53543448
Coord A exon
chr12:53537553-53543329
Coord C2 exon
chr12:53537415-53537552
Length
5777 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
TCATTTTTCTTTCACAACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
ATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAGGTGGGACTCTTCAATGAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAG
Seq A exon
GCAAGAAGCAGGACTGTTGCCAAAAAACTGGTGGTATTCAGACCTAGGCTATTTTTATTGTGCTTTGGGATAATTTTCTTAATTGGTTAAAACACAAAATCATGGGCTTAGTAGAGTAAAACCAGTAAAACCAGATAGTAGTCACTAATCCCAGTCAGCCATTCAGGTCTTTAGGAGTTCCAGATGATGGATCAGCACAAGTCTGTCGTCACCGAAAATTAGTCCTCTTGTTCTTCCAGGGGAGTATTAGTTTAATAATCGGTTTTTTAAAAAATATTTATATTATAAATATGTTGAAGATGTTAAAAGGTGATAAATTACTCAGATTTTGTTGGATAACATATTTGTTGCCAAATTCCACTCTTTTCTGAGCTGATCAGACTTCTCAGCTACACTGTTTTTTTGAATCAGCAAGTCAATAAACATTTATCAAATTTCCACTCTTCTTTGTTTCAATATATGTGGTTTTTGCCTTTAAGTAGCTTTCTACTATTATTCAAAGCATTAAAGATAAAGAAGGATGTTCCTACTGTCTTTCAAAGGAGATCAACCAGGACGGTGAAAGAACTATAAACTATGTCACTTCGGGAACTTTTAAAGAAATCAAGTGGCCAAGCACATTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTACAGGAGTTCAAGACCAGCCTTGGCAATAGCAGGACCTCCATGTTTACAAAAACAGTTTTAAAGATTGATCAGGCATGGTGGTGCATGCCTGTAGTCCTAGCTACTCGGGAGGCTGAAGCAGGAAGATTGCTTGAACCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTGCACCACTGTGCTCCAGCCTGGGTGACAGAGTGAGACCCTATCTCTCTCTTTTTTTTTTTTTGAGACAAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTTTCCTGCCTCAGCTTTCCGAGTAGCTGGAACTACAGGCGCCCACCACCACACCTGGCTAATTTTTTTTTTATGTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCTCACCTCGGCCTCCCAAAGGGCTGGGATTACAGGCGTAAACCACCACGCCTGGCCCGGAGACCCTATCTCTTAAAAAAAAAAAAAAAAAAACAGGCCAGGCGCAGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGCAAGCAGATCACAAGACCAGCCTGACCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAACTTAGCCAGGCGTGGCGGCGCACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCATTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCAAAAACAAGAAAGAAATTGAGGAAATTTTGGTTGGAAAAGAGATCTAGTGTGAACAAATTGCGATCTTCAAGAGTATTCATTAAAAGAGGGATTACATTTATTCCATGTGGTCTAAAGGGAGAAGTAGGACCACTGGGTGGAAGCTGTCACAAAATATGTTCAATTATATGTAGACCACTTAGTAGAGATATTGTAGAGGGGATTAAAATGCTGGAATCCCTTCTAATCCTGAGGCGCTATGATTCTCTGATTTTAGCCTTTATATAGTTCAGATCCCTAGATAATCCCTTAGTTTGGAAGACGAGAGGAAATACTTGAAGAAGCAGAGTCAAAGGAAGATAGTTCCCATGGAATAAGGGGCTTGGGGGAAAAAGAAAAATGCAAAGATCAAATTTTACTTTAGAATTAGAATTCTAGGTTATTGGTCACTATTTTTAAAATCAAGTCTGTGTTCCTGATTTTCTGGAATCATAAAAGATTCCAACATCTGTATCCCAAAACATATATATAAACACATTAACCTCACAATTGCATGGTATAGTGAAGCATGGGATCCTATCAGAATATAGAATAGCTGGAACCGCTTCTATTTTTCCCTATATTTAAGAAAAAATTTCCATGGGAGCTCTTTCCTTCTAAGAGGGCATACATAGCAGGTAAATCAAGATAGTTATACATGACTTTTCCATCCAGTTTAAGTGGTAAGAAAGCAAGATAGTGTCTTTATCACTGGAGTTATTTCCAAGTTCCATAGATTTCTATGAGTTTCTTTTTATGCTATCTCCCTTAAACTAACAGAAAGAGGGCTGCGCGAGGCCTGGTGGTTCACACCTGTAATCCCAGTGCTTAGGGAGGCCACACAGGAGGATTGCTGGAACTCAGGAGCTCGAGACCAGCCTGAGCAGCATGGTGAGACCTATCTCTACAAAAAATTTAAAAATCAGCTGAGTGTGGTAGCACACGCCTATGATCCTGGCTACTTAGGAGGCTGAGCCTAGGAGGTCAAGGTTGCAGTTAGCCATGATTGAACCACTGCACTCCAGCCTGGGCAGTGGAACAACACCCTGTCTTTATTTATTTTATTTTATTATTATTTATTATTATTATTTTTTTGAGACAGAGTCTCCCTCTGTCACCCTGGCTGGAGTGCAGTAGCGCAATCTCGGCTTACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGATTACAGGTGCATGCCACGACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCAATCTGTCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCTGGCCCAGACCCTGTCTTTAAATAAATTAATAAAGCAGGGAAACTCAGTAGCACATATTTGTAGTTCTACTTTTTTTTCTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCATCCAGGTGGAGTGCAGTGGTGCGATCATGATGGCTCACTGCAACCTCCACCTCCTGAGTTCAAGTGATTATCCTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGTCCATGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCTGGCTGGTCTCGAACTCTTGACCTCATGATCCACCCACCTCAGCTTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGTGCCTGGCCTCGTATTTTTTTTGAGACAGAGCCTCACTCTGCTGCCCAGGCTAGAGTGCAATGGTGCTTGCAACCTCAAACTCCCAGGCTCAAGTGATCCTCCCGCCTCAGTCCCTGGAGTAACTAGGACTACAGGCACTCACCACCACACCCAGCTAATTTTTGCATTTATTTTTAGAGATGGGGTTTTGCCATGTTGCCCACACTGGTCTTGAACTCCAGGGCTCAAGAGATCCACTAGCCTCAGCTTCCCAAAGTGCTGAGATAACAAGCGTGAGCCACCACACCTGGTCTTGTAGTTCTGCTTTCAAATGGCAGAACTAGCCACAGTCTTTTTGTCATTTTTTTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTGACAGGATCTTGCTCTGTCTCCCAGGCTAGAGTGCATTGGTAGAATCTTGGCTCACTGCAGCCTCCACCTCCTGAGCTTAACCAGTTCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGTACCACCATGCCTGACTAATTTATTTTCATAGAGACAGGGTCTCACTATGTTGCACAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTCCCACCTCGAATTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCACACCTGTCCAAGAAAGGGTTTTGCTATTTGCACAGGCTGGTCTAGAATTTCGGGCCTCAGGTGATCCTCCCACCTTGGCCTCCCAAAGTGTTGAGATTACAGGCATGAGCCACCACACTTGGCCTATGAGGGATTTTATACCCAATTTATTATAGGCAAATTCAAGAAAATTAGCTTCCCATAAAAAGCTTCAAGTCTTTTTCATTGCCATTTTAGCTCAGTTGACACTTCTGGGAGACTAGTTTATAGTCAGCCCTTTCCTCACTGGGCATTCCTTGGTGTATCCTCCTGCCTGTACAGGAGTGGTCTTTACTTCCCCTTAATGAGAAGTACAGGCTCAGTGGAAGAGTCTCCAGAAGTGTTTAATGAGTGTGGAACTTTGCTGAACCGCAGCTTTGCTAGGAGATGCCCTAGAGGATTTCAAATCTATGGTTGTATTTACTTAGAGGCTTCTCCTTCCCACTAGTCTCTGACTTAAGAGATCTCAGAATTAGCTAAATTGGACCTGACATCTTAGCTATGTAGAAAAAATGAGGCAGAAATGAAGCTACTTTTGCTGTTGCTCACCCTCCTCAGATTGGGGAAAATGAACCACTACTACCTTCTCTAATGTAGTAGATATCACATTATCTTTAATTTACTCAGCTAGCTATCAAGAAGGTTTCTAAGGGTTAGGGTAGCAAGGGAAGATCTTGAAACAAGCAGTTGCTTCACCAAGAAGCCTGGGATACAGGATAGATAGAACAAAGGATCCACTTTGTTATGAAACTGAACTGCAATGCCAACCCTCCTATCCTGGTTCAGTGTCAAGGCCATTATCTCAGATGGTTTATTGTTCCCTGCAAGGCCGTTTACAGCTCCACAGTTCTGTGAGGTGATTGCATCACTGCCAGGAAAGTGCTCTCTTTCCTTTCTGGTTTTCTCCAGTCTTGCTCCTAAGACCAAGTTGTCATTTATTTCACCAATCAGATGATCAGCCTTTCTTTTCTGTTACCCCAAACCCCTTGTCTACCTGATACATCCAGCACCATATTTTGGGGTGAGATCACCATCAAGCATGGTGAGTTCCCCAGAAAATACCTTTCCTATCTGGTTTGCAGTACTTGAATAGCCAGTTTGTCTTTGTTTGCTTTTGGTAATTGGGTAATCCTTGTTGGCAGAGAAAGTGTTCACAGCTCTCCAGTGGCCAGCAGATTCAGGAATTATTTTGATTTCCTGAAAAATATTATCATAATATTTGCATGGATTTAAATGGCATCTTTTTTTTCAGGTCTTTATAAATATTTGTTTACCATTGGTGAAGCAGGTATTATCTTCATCTTATAGTTGGGGAAACAGAAGCCCTGAGAATTACCGACAAAATGATTTGGCCAGAATTGTACATAAAACATAAGGGGCCCATATTTCTTGGCCGGATGCAGTGGCTCATTCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGTGAATCACCTGAGGTCGGGAGTTCGAGATCAGCCTGACCAACATGGAGAAACCCCATCTCTATTAAAAATAAAAAATTAGCTGGGCGTGGTGGCACATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATCTCTTGAACTTGGGAGGTGGAAGTTGCAGTGAGACGAGATCACACCATTGCACTCTAGCCTGGGCAACAAGATTGAAACTACGCCTCAAAATACAAAACAAATCAAACATAAGGGGCCCACATTTATTTGACATGCAGTTCAGTGCATTGTATAAGAGCAGAACTTCTTAGAAGCATATTCCCTTATCTTGGAAATGGGAAAATATAGATTCAACCTGAAAGGAATCATAGGGTTAAACTCTGTTCATTTTTCTTTCACAACAG
Seq C2 exon
GCTGCTGCTGGGCCCCTTGACATGTCTCTGCCTTCCACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAGGTAGACTCATCCCCACCTGATAGCCCTGCCTCTAGTCCCTGTTCCCCACCACTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653:ENST00000420353:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains