RnoINT0022301 @ rn6
Intron Retention
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60748411-60752875:-
Coord C1 exon
chr3:60752747-60752875
Coord A exon
chr3:60748590-60752746
Coord C2 exon
chr3:60748411-60748589
Length
4157 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TTTATCTTAAAATTAAATAGGAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATGCCTCTAGATCTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAACCTTCTGTTGTAGAAACAACTCACCAGGATAGCCCGTTACCTCACCCCGAGTCTACTACCAATGATGAAAAG
Seq A exon
GTTAGAACTATGAAAAAGATAACCTTTCAGAAAATTATTTTTTTTAGATTATATGCCTTTATTTATTGTTTATATTTGTGGGTATGCATGGCATGTGATGGTCAGAGGACAACTTGTAGGTACCAATTCTCTCCTTATGCTGTGTAGGTCCGAGGTGTCGAGCTCAGGTTTTCAGGCTTGGTGGTAAGCACCTATCTACCATGCTCTTTCACTTTTCCTGAACTTGATTATTTTAAATCTGTATGAGACATTAAGGTATTAAATTTTATATAATTTAATGGAAGATTATAGGTTTTATATATAAAAACCTGTGTGAATACTTTAGGAAAATTCCATCTTCATAATTATTTTTATTAAACAATGGATATTAAAGGAGAGAACAACTTATTTAGAAAAAGTGTTATTTGAAGATAAGAAAAATGTATACAGCTGAACCAGGATATCCAAGAGTGAGTAATTATTACTCCAGTATATATTTGATATTAACAATGACTGGTACTTCCTTAAGTACATTAGTAACTTGGGGTTCCTGGGCTATAGTTAAGTATTGAGTTGAGTTACATTATGATGTGTTCTTCATCACCTTTTCACTTGAAAAATACATAAAATGAGCAAATTTATATATGAGCAGTTTGTCTACACATAAAAAGACAGTGACAGTGTCCTTTTTAAATATTCTTATAAAATCATAACATGAATAGATTTCTGTCATGAGAATATAGTCATTTACCCCTGACAGGGATATAGCTTCTAAAAAAAAAGGTAAGGTAGTTTCAGTAAGCAGTCTCATCATTCTTTCCAAAGCAGAGTATGTCTACACAAATGTAGACAGTATAGCCTAATGTAACTTAGTATATTACAGGCTGTCATTCCCAGATTATACTGTACTACTTGATACTACTATATGGACCATGTAGGTAGTTACAGCATACTGGTATTTAAACATAGAGAAGGCACAATTGAAAATGCAGACTGGGAGGATGGTTCAGTAAGTAAAAATTGCTTCATAAGCCTGACAACTTGAGTTTCGATTTCCCAGAACCCACATAAGAACCAGATGCAGTAGCACTAGTGCCTGTAGACCCTTCATACCCTTAAGGAGAGATAAGAGGAGGAGGTAGGAAAATCTCCAGAAACTCATAGACCTGACCCTAGCTTACACAGTGGCAAAGAAATTTTGTGTCAAACAAGATACAAAGGTGAAGTCACACCCAAAGGTTGTCCTCTGGCCTTTATGTGTTCATGCCTGCATCCCCACACACAAACATGTACACATACAGGTATACTCATATCACAGACATACACGTATACACCAGAGAGAGAGAGTGGAATTTACACTGCTGGATTAAGTGAAATAGTATAAAGTGAATGTGAAAACCTGAGACATCACTTTATACTGTAGGCTATACAAACATATGTAGACTACACTAAATATCTTTTTAATTCTTTCAATAGCAGATTAACCTGGATTACTATAACTTTAATAAAGTTCCTCATTTTTTTAACTTTTTGCCTAATAACATTCATTGTGAATCACAAATAGATTGTATAGGAATACAATATTAATACGTTATTTATATCCTTATTCTATACTACTCCTCCCCCAGTACTGAGAATTGAAATTCTAGCGGGTACCCAACCACTGAGCTATATTCTCAACCCCTAACTTAGAATTCTTGGAAGCTAAGCATTAGATATCCCCAAATCACAGTTTTTATGGTTATTCTTCATTATTATCTTGGTATATTTAATTACTCTCTTCTTTCTTAACATATGGTCATTTCCACATTTATTATAGTTATTAAGGATCCTGAGAACAGTCTTATTTCCCTGCAGAGCATTCCTTTCCCTTTATATTTTCCAGTTTTCATTCTTTGTGGCTTGTGTATCATCTTCTAGGGGTGCTGCTTCTGCATTCCTTAGTCGTTAGTTCCTTTTAGGTAGTTCATAGTTTCACTGCGCTGAGAAAATCAGTTCAGGACCTCCTCTGTTCTCATTTTCTTTTTAGGGAATTCCATCAAGACTTGTAATTTTAGAAACTATATATTGGTAATTCCAAATTTCTAATAGTCAAGGTATCTCTCCTGATTGCTGAACACTGTTTCTCTGTTGGCATCTCCTTAGCTTTGTCTAGGGAACATCTGAGTATTTCTGAAACAGAGTTCTTAGTTCTGACCTCATTTTTCTCTGAGAAATTTTCCTCCACCTATACATGGTAGTATGTCCTTGTAATTCCTGCACTAGGAAGGTAGTGTCAGGAGTATTGGAAATTCAAGGCTAGCCTATGCTACTAAAACTTTATGGGCTGTGTAGCAAGGCCTACCCCTCACTCCCAATACCCTTTCTGCACTTTCCCACAAAAAAGAAAGGGAAATCTGCATCTATCTACTTATTTAAGCAAAACATTTAGGTGTCACTTTAATTTTATGTTTTCTACCTGTCTTTGAAACCAGTAGCCGATCTTAGTGTATTCATTTACCAAGCATGTTTTGAATAAGGTTCAAACCTCCTCTGTTCAGTGTCATTGTCCTAGTTGTCATCTTTCACTTGTACCAGTGCTACCCTACTTCCCTTTCCTACTGCAGTGCTGAGAGTGGAATCGAGAACCCCAAACATGTACTCCAGACTACTGAAGGTTCCTCATCCCTTTATTTTTCTTCTAAAACACAGTTTCTTTATGTTTTCCAAGGTAGTTTCATATTATTAATACTCTTGTGACAGTTCCCAAGTTGCTGGGACTGTATAACTTCATGCCAACCATACCAGGCTAAACTTTGTTTCAAACCTGCGAACTTAAAAATTTGAGTCATTCTTCTCTCTACTGAAAGTCTTTTAGTAATTTGCTCTTGACGACAACGACAATGTATATTTATTCATTAGGGAAAACCTCATTGAGTTTTGACTGTCTATCCCTCCATCCTCATTTCATGCTCTCTGTATTGATCAAATACTCTTAAGGTTTTTCCTGCCTAGCATTACTTCCTTCTCTACAGCCTGTCCTCCTCTTGATTCTTTCATATCAGATCAGATTTTTTTTTTTTTTGGCAAGGTTTTATTCCTTCACTATTAAAGCTCTACCTTTCCCTCTGCTAAATCATTTGACTTACTACATTATCGTTGAACGATTAATGTCTACTTTGATAGAAGTTTCTGTAATGGTTTTACTCATTGTCACTCTGCTCTCCAATTGTTGAGTTGGAAGCTTTTAGATGTGCTGAAAACCGTAGTTACAATGCTACCAATTTCTCCTTGGAAGTATCTTAATAAGGCTCCAACTGATAGTAGCTATATAAAGGACAATTCAAAGGGACAGAATAGTTAAGGAGTTCTGAGTAAAGCCCTCATCTCTTTTGTAATCTGTAAAACTAGGAAATATTTTAAGACTCATCCTGGCTGATTCATAAATTCTATTTCTCTTTAGTTTGGGAAGTTGTACCTACTAATTTTATATACTCACGTATCAGTGTTACTTGGTCTTTTAATACTAGAAAATTATTGTTACCAAATGAAAAACTACCTGAGATCAGCAGACTGTTTTGTTTTTTTTTTTTTTTAGTTTAAATGTCTTAAAACATGTCCCTTTGTTTGGTTTGGTTTTTGAGACAGGGTTTCTCTGTTTAGCTCTGGCTGTCCTGGAACTTGCTCTATAGACCAGGCTGGCCTCAAACTCAAGACATCCACCTACCTCTGCCTCCCTGGGATCAAAGGTGTGTGTTACCACCACATCTTGACACATTTCTAAACACCAAATTGTTTGTCATAGCACTACCTTGCTGGATCAGTTTCTTGACTTTGCAATATAATAAACAAATAGGAAAGGAAAATCCCCTTCCAAGTTTTGTTTTTTAATTACCCAGAGTAAATTGTATTTGTATTTCTTACTAAAATTCTCACAAAAACATTGCTAAGTAGCCCAGCCTAATTTATTTTAGAGTGATAAAAAGACATATTGAACAAAACATGTTTTTTTTTAAATTTTTAGAATGGTATTTGAACTTTAGAACTGCTTAGATATTTTCTATTAACATTAGATATTAATTTACTTGTAGAGGCATTACGTGGTTGCTTTCAGAAATGTGTTACATTCTGTTCACTGAGGTACATGAATTAACTTGCGTTTTTAAATACCGCCCTTTATTTATCTTAAAATTAAATAG
Seq C2 exon
GAAATACCATTGGCACAAACTGCACAGCCCACATCAGCTATCGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTCACAAGTTCTGACTCAAGTGTAATTATTCAACAAGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597:ENSRNOT00000002174:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]