BtaINT0023885 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:62934561-62934761:-
Coord C1 exon
chr6:62934701-62934761
Coord A exon
chr6:62934640-62934700
Coord C2 exon
chr6:62934561-62934639
Length
61 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GGATTTTTGTTTTCCCTCAGGTT
3' ss Score
10.27
Exon sequences
Seq C1 exon
TTCACAGTGGTGGCCCGACAGAAACACGTTTTGTGAATCTAGCTCACAGATAAAAAGAAAG
Seq A exon
GTCAGAGTTCACAGAGCTAGTTTATCGCAAATGGTTCTCATGGATTTTTGTTTTCCCTCAG
Seq C2 exon
GTTTTCTGGGTTCATTGTTTAAATGGCCTCTTCCACTCAGTTATTCTGTTTTGGTTTCCACTAAAAGCCCTTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156:ENSBTAT00000014818:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACAGTGGTGGCCCGA
R:
TGAAGGGCTTTTAGTGGAAACCA
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]