GgaINT0067968 @ galGal3
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70115853-70118366:+
Coord C1 exon
chr4:70115853-70115975
Coord A exon
chr4:70115976-70118287
Coord C2 exon
chr4:70118288-70118366
Length
2312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
GGATTTCTCTTTTCCCTTAGGTT
3' ss Score
10.19
Exon sequences
Seq C1 exon
ATGTTTACAGCAATGCCTCCACTGACTCTTGGAATATTTGAGAGATCCTGCCGAAAAGAAAACATGCTGAAATATCCTGAGTTATACAAGACTTCCCAAAATGCACTGGACTTCAATACCAAG
Seq A exon
GTAGATAAAAATCAGATGTCGTTAAAACACTATTATCTTTAGGAGAGGATTTTTATTGCTATTGTTTCCAGTTGTCCCCTGATCGATAAATGGTACAAATCATATTTGTCTGTTTTTACTAAAACGTGGAAATGGACAGCAGGCGTTCTTTTATTTTCAGCCTTGATTCTTTTCCTCTGCTGGCAATAAAGCTGTCTTCTGTAGGCAGAAGTGATTAAACTTCTCTGTCATTGGTTTGTATGTGTTTGTACTGTTATATGGAAATGGATTACAGAAGCCTGTGGAGAAGCGTTTCAGAGGACAATAAAAACTGTCATTAGATTTGTAGAGGGAGGGACATGGTTCAATTCTTTGTCAATTTGGGGTTGTGATTTTACAATTTAATTTTGAGTTTTGGAAGGAAATACTTGAAGACAGTTAAAAATGCATCAGGAAGACCAAAAGAAATTTGAGGTTACTTGTAGTAGAAACACTGATCTTGGAGATTAAATAGTAAAAACATAAAATTTCTACGTATTTGTCCATGAATATTCTGTATTAAGATATAATTAAACTATTTCCTGAATCTCTTTGAGCATTGTGACATTGTAAGGGTTCCTTTTGATTTTATTTTGTTTTTCTACATGTAATTAGGACACTGAAGTAATGTCATTGTATAGTGAAGTTGAAGACATTGTTAGTTTGCCACTGAATGCCTGTTAAGTGGTGGTTTGTGGTTTGTGGAGAGCTGATACTGTTACTCTTGTGCCACTTTTCTTATGAAACTGAAGTACTTGTACAGAGAATTACTTGTCTAAACTGTCCTTGAATCTTCTGTGCATGAGATTTTTCTCCTTCAGCCCCACTTCTTCTCTTCACCCTCAAACCTTAAAATGATAAGGAAACTATGTCACTATGAATGCTTTAACAATGTAAGACTTTTGATGGTCTGTTAATTCAGGCACTTCTGTGTTGTGATAATTTTAATATGGTAATGTATGTCATGAGTTACAGTTAAGTTTTTAAATGCTAATTCTGTTATACATGTATATTTATTGCACAGTTGTATTGTTGACTTCATTGGAAATTCTGTGGCTCTTCCCAAACAATACTCATTAGGAGTAAAAGTCTACAAAAGTCCCAGCTACATAAGTTGAATAGGTGTTGTTAAAGATTTGGAAACATGACTGTCTTGAATGTTGATGCAGATGTTTGTTATGGTAAAAGGGATCAAAGGTTATGAGGTCATGACAGAGGTTAAAGGATTAGCATGTGACAATAAGAATTGGTCAGGAAAATGGAAAAGTAGAACTAATTTTTCTTGCATCCACCTGTGCTTTCTGTCAAATAAAAACTTCTGGTAATGACATAGCAAGAGGGAGAGACAAAGGTTAATGAGTAGCACAAGTTCAAATGTGCAAAGTGTTGGAGTGTAAATTGGATCATACATCGTAGGGTAGTTGCATAATCTAACAAAAGACTTTGAGACGTTGTGAAAAAAACTGTGAGGCAAGCAACTTAGTTTCAATTGTTTGAACATCTGAACTCTGATAATACATATTAGTTAGTTCTAATAAAGGCTGTAATTGTCAAATACATTGCTAATGGAAAAACGAAAAAAAAAATTGCTATCCTGCAGGCACAGGTTACAGATATAAAAAGACTTAAGAATATGCATGATATCTATTACGGAAAGCATCAGAAGGTGGTTTCTGGATAAACTTAATGCAGTTGTTTTTGGAAGTTTTTTTTTATCAATGGAAATAAGTTTGAAGTTAATTCGGATTGTTTTGAAAGTACGTTAAAGGAAGTTCCATGTAATGAAGGTGTGCGCTTCAAGAATGGAGCGTGTAAGGAGAAATCTTAGGAAGATATTAGTTGTCCTTTTTTAATTTCTTTGTGCGTGGAAATATGTAGGTAAGTGTATGTAAACTCGTGGTTCATTGTTCTGCTGTAAAAATCATTATGCAAGAAGTAAATTATAAAAACTGAAGTCCTTTTTTACTTCCCTTCCCCAGAATGTAGCAATTGTTCCACTTGTCTGGCTTAGTTTATTTTTTTCTGATGATACTCCCATATGTATACGTTTTAATTGCCCTTCTGATTTGAAATTAAAAGGAGGAGATAATACATACTTTTTTTCAAAACATAAAAATAAACAAATGACCCATGAAGAGCTAAGAGGCAGAAAGTGCCTGTCAGTTATGTTACTTCACAGTGGTGGCCTGACAGAAGCACATTTTGTGAATCTAACACACAGATGAAAAGAAAGGTCAGGGTTCACAGAGCTAGTTTGTTGCAAATGGTTCTCATGGATTTCTCTTTTCCCTTAG
Seq C2 exon
GTTTTCTGGGTACATTGTTTAAATGGCCTCTTCCACTCATTCATTCTGTTTTGGTTTCCACTTAAAGCCCTCCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]