RnoINT0023687 @ rn6
Intron Retention
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42168714-42172795:+
Coord C1 exon
chr14:42168714-42168836
Coord A exon
chr14:42168837-42172716
Coord C2 exon
chr14:42172717-42172795
Length
3880 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GGATTCTTGTTTTCCCTCAGGTT
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATGTTTACAGCAATGCCTCCCCTGACGCTCGGAATATTTGAGAGATCATGCCGAAAGGAGAACATGTTAAAGTATCCTGAGCTGTACAAAACGTCCCAGAATGCTCTGGACTTCAATACCAAG
Seq A exon
GTAGGAGCTTGTGCCCTCTCCTCTGTTCAGAGGGGTTTTTCTCTGTTACTGCAGCTTGGGGTGTCTAGCCTGCCTCAGCTAAGCACTTCAGGGTAAGAATGTAGCGAGTCATGTGAAGGAGTTTTGTTGGTTGGATTACGTTGTTTGAGAGATTTTCTTGTTGTTGTTGTTGTCTGTTACTTTGTTTCCTTTTGTGGTTTTTTTTCTTTTGAGTGTTACAAAATTAAAATAAAACTGCTCTTCATTGGGGTACTTAGACAGCAATGAGTAGAGGCCACTCGACTGTCCTTTCAGACAGTGTAGGAAAAACTTACTTCTCATGGACTAGTCACCTGGGACTAACATGGCCGTACTTGTCTGAGGAGTCTTATCTTGTTCTTTCCTAATCCTGTGGGGGAAGAGTGTTCTCATTAGAATTTGAGAGGGACTGAGTAGGGCATTAGAACTTCCTAGTCTCTAGGAAATAACCTCTCATTTACTCAGTAACTCTGAGACTTAAAATTAAAAACACAATATAAAGTATCCAACATTTTACCTAAAACCTTCCTCTGCCAGGTTTCTGTTTTCATTTTTGTTTTTTGTTTGCTTATTTGTTTTAATCTAGAAAGGTATTTCCTCTTCTTTTCTTTATTAGCATAAAAAGTTTCATTAGCATAAAAAGCAACAGGTTTCCTTTTGGTGTTCTCCTGTGGGGTTCTTTTGGTTTACTCTCTTCCTGGCTTTTCCTCTCCTTCCTTCCTTCCATGCCCTTTTGTCTCTTCCCCCCACCATGCCCCTCCCTTGTCCCCTCTGGTACTTCCAGATCCATGTGATCCATCATCGTCCCCCTCCCTCCTGCAGCCCTCCCACTTCAGCCCCCCCCCCCAACCTCCTCCTAGTGCCTTCCCTCAGTCTACACTCATTTTCACATGAACATAAATGGATAAAAATGAGGAGCTAAGAGCCACACAAAAGAGAACACGAGCTATTTGTCCTTCTACACCCGGACCACCTCAGTTACTATAATATTTTCCAGTTCCATCCATTTCCCTTTTAGGTTCATGGGCTTATTTTCCTTAATGGCTGAATGAAATAACACCACATAAATGTACCACATTTTTAATGTCCATTCATCGGCTGGTGGACATTTGAGCTGATTCCACTACTTGGGTTCATACACTGCCTAACACAGCACGGGCTAGCATCTTCTCTGTTCTGTGATATTTAGCCATTCCAGCAGAAAAGACTCTGTTTCCCCATAGTTTACCTTTCTGCAGTGATATCTGTTAACATGTTTCTACACTAATGCCATGCAACAATTCAGGTTTCTGCATGGTGGAACTGAGAGGCGGGGTTTGAGATGCTGACAAAGGGAGATGCCACTCTGAACCACTAATATCATGTATATGAAAATGGACAAATATGATGCCCTTTTCCTGAATCATTTATTTCTACTTAGTTTAGTGCATGTTTAGCAGTAAATTAGTGACAATTAGGTTATAATTGCAATTCAGAGTTTTGAATTTATAGTCATTTAACATGAGGATTTTTAATACCTGTTAATTCATAAAGTTCTCTAGTGCTGTTTATCCTCAGTTTACCAAGACAAAGGGAAGCAGGCATTTCCGTGCCTTTGTACAATGCACTGTAAATGGTAGTGTTGAGTTTATAACCAAGAAGTCACTTTTCTCCCGAGACTCAATCTTCTTGCACACACTGTGCATGGATGGCCAGTGGCACACATGCATATAACTCAATGACTTCAGCTTAAATAACTGAAACTAGTTGATTAAAATATCAAATATCCAGAAGCTTGCTTAATTTAGACTACTGGTTCTGACATAGTGTATTTCTAGGGGTATGGTCTTAAACTGTTTCTCTTATAGTACACAATGTCTAATATTTTAATGTTTTATTTTTTAGGTTGGTTATTTATGCATTTATGTATGTATGTATTTATTTATTTATTTGAACAACTTGTATCAAATTCTCCCCACACTGCTGCCATGCTTTTTGCTCTCTGTGAGGGACATTTTCAAACGTTAAAAAGCTATAGTCAGGGCAGATGTCGTGGTCATGAGCTCTCATTTTCCTCAAAAGTGTTCTGGGAGATGGGTACATCAGCAGTGACCCTTACCAGCCGAGTGGGTTTTATCACTCTCAGCTAGAGCTCCTAGCCTTCCCGTAGTGGGGACTCTGTGGTGCTGTCTCACATTAGCTTCCCAGCCACAAATGGGACATGTCCGCCTTCCACTGACCCTCCCAGGACAACCCAGTCTTCCTCTCATGCCCTGCACACAGGACAACATGGCCACAGTTTTGTGCATATGTGACAGTTCGAATGCACTGTTGATGGAAAAGCAACTTCTTCCTTCTGTCTCTTATTGGTGAAGAAGTCCTTCATTAGCTTAGAGCCCAGACATTTAGAAAGTCTCCAGACCAACTCAATTAGCTTACGCAGTTCCCATATCTCTTACATATGTATTTAGCTTGCCATCTATTTTCCAAAGGCTTAGAGATTTGGAGCTAATATTTTCGTTAAGACCATTTGATTGAATCCCATCTAAATGTTTTAAAATTCAGGAACAAATGGTTACAAAATGCATAGTTGTCTACACAGCGGTTGCCGAGGGTCCCCAGTGTGGTGCATTGTGACCTTGAATGATGGGGCTTACATTTGTTATGGTAAAAGGGGTCAGAGGTCCTGAGGTCATGACAGGGGTTAAAGGATTAGCATGTGACAATAAGTATCAGTCAGGGAAATGGAAAAGTAGAACTAATTTTTCTTGCACCCACCTGTGCTTTCTGTCAAATAAAAACTTGTGGCGGTGACACAGTCAGGAGAAGCGACAAAGGTTAATGAGCAGCACAAGTTGAAACGTGTAAAGAACTGGAGCGTAAATTGGATCATACAATTCCACGTGGCTGGGCGAGCCAACAAAGGAGACTGAGCTCACAGTGGAATATTTTGGGAGGCAGGCAGCTTAATTTCTGCTGTTTGAACAGCTTAAAACTATTAATACACGCCAATCGTATTTAACATTAAGCTCCGTTTGCAAAAAGCCATGTTAAATGATGGGACTACAGCTGTTCTGCGGCTCATAAGGTTCTAAACAGTTTCCCTATAACTTAATCTCTCACATTCACGCTGCGAAAACTCCCAACGATGCCTGCTCTCCTGTCCGTAATACCAGAGACGTTGAAGGTAACGGCCGCTAAGTGGCTGTGCCGAGCCTCTGAAACCCGCTGTGGACAGATATTAAGCAAAAGTGTAAAAGCCTTTGATAAACTCAGACATAGTCACGATACTTTACTTTAATGAACATATAATCACAAGGTAGACATTGTGGGGTTATTTTACAGTGTATGCCTGTGCATGTCCATTACAAGAAAGAGAGAAAAGCTTTCTAATTTGTATTATTGGAACATTTGCTGCAAAGTAGGGTAGGAAATAAATTGGGGGAGAATTCCCCAGTCTTGTCTTTTAAAGGTCTATTCTTCTAGAATTATGAAAAGAATCCCAGTGTAAGAAACTCCAGAATCTGCATTTGTTATTAGATTTGGGCGCGCGCACACACACACACACACACACACACACACACACACACACACACCGACCTCTTTGGCAGGCAGACGTTTAAACTTCTGATAGTGGATTTTTTTTTTTTAAGTAGAAAAAAAAATTTCAAGTGAAGCTGAAAAAACATCTTGAGAAACATAAAAATAAATAAATGACCCATGAACGTCTAAGGCAGAGAGTGTCTGTCAGTTCTATTAATTCGCAGTGGTGGCCCCGGCAGAAACACATTTTGTGCATCTAGCTCGCAGATAAAAAGAAAGGTCAGAGGTCACAGCACGAGTTTATCACAAATGGTTCTCATGGATTCTTGTTTTCCCTCAG
Seq C2 exon
GTTTTCTGGGTTCATTGTTTGAACGGCCTCTTCCACTCAGTTATTCTGTTTTGGTTCCCACTAAAAGCCCTTCAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200:ENSRNOT00000044017:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]